Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 892)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 47477)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-155	-3.589e+02	0.0000	150.0	16.82%	308.6	0.65%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-118	-2.719e+02	0.0000	169.0	18.95%	799.1	1.69%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-30	-7.068e+01	0.0000	123.0	13.79%	1925.9	4.08%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-28	-6.556e+01	0.0000	105.0	11.77%	1532.8	3.25%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-27	-6.326e+01	0.0000	102.0	11.43%	1496.2	3.17%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-24	-5.678e+01	0.0000	84.0	9.42%	1143.3	2.42%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-20	-4.821e+01	0.0000	46.0	5.16%	399.0	0.85%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-14	-3.357e+01	0.0000	79.0	8.86%	1526.5	3.23%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-12	-2.874e+01	0.0000	67.0	7.51%	1290.8	2.74%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-12	-2.806e+01	0.0000	75.0	8.41%	1568.9	3.32%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-11	-2.636e+01	0.0000	119.0	13.34%	3219.6	6.82%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-11	-2.590e+01	0.0000	35.0	3.92%	449.5	0.95%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-11	-2.534e+01	0.0000	50.0	5.61%	866.9	1.84%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-10	-2.512e+01	0.0000	19.0	2.13%	127.2	0.27%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-10	-2.317e+01	0.0000	57.0	6.39%	1142.0	2.42%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-9	-2.143e+01	0.0000	65.0	7.29%	1465.9	3.11%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-7	-1.760e+01	0.0000	175.0	19.62%	6148.2	13.03%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-7	-1.749e+01	0.0000	34.0	3.81%	594.0	1.26%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-7	-1.632e+01	0.0000	35.0	3.92%	655.3	1.39%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-6	-1.609e+01	0.0000	25.0	2.80%	373.7	0.79%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-5	-1.350e+01	0.0000	19.0	2.13%	266.2	0.56%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-5	-1.321e+01	0.0000	29.0	3.25%	559.2	1.19%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-5	-1.201e+01	0.0001	7.0	0.78%	35.4	0.07%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-5	-1.179e+01	0.0001	38.0	4.26%	908.9	1.93%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-5	-1.166e+01	0.0001	30.0	3.36%	640.4	1.36%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-5	-1.165e+01	0.0001	12.0	1.35%	128.2	0.27%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-5	-1.156e+01	0.0001	34.0	3.81%	778.1	1.65%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-4	-1.086e+01	0.0003	34.0	3.81%	806.3	1.71%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-4	-1.074e+01	0.0003	5.0	0.56%	18.0	0.04%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-4	-1.060e+01	0.0003	59.0	6.61%	1762.2	3.73%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-4	-1.044e+01	0.0003	13.0	1.46%	169.9	0.36%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-4	-1.010e+01	0.0005	37.0	4.15%	946.8	2.01%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-4	-9.948e+00	0.0005	43.0	4.82%	1177.2	2.49%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-4	-9.648e+00	0.0007	13.0	1.46%	183.1	0.39%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-4	-9.520e+00	0.0008	58.0	6.50%	1793.0	3.80%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-3	-8.584e+00	0.0019	51.0	5.72%	1573.3	3.33%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-3	-8.357e+00	0.0023	45.0	5.04%	1347.5	2.86%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-3	-8.190e+00	0.0027	39.0	4.37%	1121.2	2.38%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-3	-7.794e+00	0.0038	61.0	6.84%	2047.0	4.34%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-3	-7.450e+00	0.0053	85.0	9.53%	3125.1	6.62%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-3	-7.320e+00	0.0059	27.0	3.03%	711.9	1.51%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-3	-7.106e+00	0.0071	60.0	6.73%	2063.0	4.37%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-3	-6.991e+00	0.0078	130.0	14.57%	5247.1	11.12%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-3	-6.931e+00	0.0081	40.0	4.48%	1240.7	2.63%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-2	-6.887e+00	0.0083	40.0	4.48%	1243.1	2.63%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-2	-6.859e+00	0.0083	164.0	18.39%	6884.5	14.59%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-2	-6.636e+00	0.0102	81.0	9.08%	3034.5	6.43%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-2	-6.352e+00	0.0132	46.0	5.16%	1531.7	3.25%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-2	-6.239e+00	0.0145	54.0	6.05%	1882.9	3.99%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-2	-6.183e+00	0.0150	36.0	4.04%	1129.8	2.39%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-2	-6.093e+00	0.0161	159.0	17.83%	6770.3	14.35%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-2	-5.859e+00	0.0200	35.0	3.92%	1111.7	2.36%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-2	-5.557e+00	0.0265	62.0	6.95%	2301.1	4.88%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-2	-5.444e+00	0.0291	6.0	0.67%	79.1	0.17%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-2	-5.339e+00	0.0318	28.0	3.14%	862.4	1.83%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-2	-5.249e+00	0.0341	73.0	8.18%	2834.6	6.01%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-2	-5.094e+00	0.0392	23.0	2.58%	678.3	1.44%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-2	-5.066e+00	0.0396	41.0	4.60%	1427.7	3.03%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-2	-5.004e+00	0.0414	30.0	3.36%	967.6	2.05%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-2	-4.834e+00	0.0482	5.0	0.56%	64.8	0.14%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-2	-4.717e+00	0.0533	70.0	7.85%	2764.1	5.86%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-2	-4.666e+00	0.0552	24.0	2.69%	746.0	1.58%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-1	-4.572e+00	0.0597	33.0	3.70%	1127.4	2.39%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-4.561e+00	0.0597	31.0	3.48%	1043.4	2.21%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-4.322e+00	0.0743	60.0	6.73%	2356.0	4.99%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-1	-4.251e+00	0.0786	76.0	8.52%	3108.6	6.59%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-1	-4.206e+00	0.0810	98.0	10.99%	4159.2	8.81%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-4.184e+00	0.0815	14.0	1.57%	380.2	0.81%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-1	-4.170e+00	0.0815	30.0	3.36%	1033.3	2.19%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-1	-4.086e+00	0.0874	10.0	1.12%	238.3	0.51%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-1	-4.077e+00	0.0874	51.0	5.72%	1974.2	4.18%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-1	-4.031e+00	0.0897	106.0	11.88%	4575.2	9.70%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-1	-3.931e+00	0.0979	38.0	4.26%	1405.9	2.98%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e-1	-3.886e+00	0.1010	10.0	1.12%	246.3	0.52%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-1	-3.794e+00	0.1093	97.0	10.87%	4184.5	8.87%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-1	-3.755e+00	0.1121	35.0	3.92%	1290.9	2.74%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-1	-3.690e+00	0.1180	46.0	5.16%	1793.8	3.80%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-1	-3.684e+00	0.1180	80.0	8.97%	3387.1	7.18%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-1	-3.608e+00	0.1249	36.0	4.04%	1350.5	2.86%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-1	-3.603e+00	0.1249	45.0	5.04%	1758.8	3.73%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-3.564e+00	0.1273	13.0	1.46%	374.8	0.79%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-3.427e+00	0.1442	9.0	1.01%	229.3	0.49%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1	-3.405e+00	0.1456	113.0	12.67%	5041.0	10.68%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-1	-3.404e+00	0.1456	15.0	1.68%	463.3	0.98%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-1	-3.392e+00	0.1456	20.0	2.24%	671.3	1.42%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-1	-3.282e+00	0.1590	72.0	8.07%	3073.4	6.51%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1	-3.240e+00	0.1638	56.0	6.28%	2319.8	4.92%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-1	-3.109e+00	0.1847	19.0	2.13%	651.5	1.38%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-3.102e+00	0.1847	15.0	1.68%	483.8	1.03%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-1	-3.080e+00	0.1859	42.0	4.71%	1687.2	3.58%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-3.026e+00	0.1941	10.0	1.12%	286.8	0.61%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-1	-2.993e+00	0.1984	9.0	1.01%	249.9	0.53%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-1	-2.947e+00	0.2054	42.0	4.71%	1705.7	3.61%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-1	-2.897e+00	0.2137	6.0	0.67%	142.3	0.30%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-2.717e+00	0.2533	25.0	2.80%	952.8	2.02%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-2.716e+00	0.2533	7.0	0.78%	186.1	0.39%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-1	-2.670e+00	0.2599	43.0	4.82%	1792.1	3.80%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-2.650e+00	0.2624	9.0	1.01%	267.6	0.57%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-1	-2.616e+00	0.2687	59.0	6.61%	2566.5	5.44%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-1	-2.615e+00	0.2687	33.0	3.70%	1331.8	2.82%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-2.587e+00	0.2712	86.0	9.64%	3891.9	8.25%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-1	-2.571e+00	0.2728	12.0	1.35%	396.0	0.84%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-1	-2.503e+00	0.2893	103.0	11.55%	4755.0	10.08%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-1	-2.395e+00	0.3192	54.0	6.05%	2365.2	5.01%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-2.356e+00	0.3286	57.0	6.39%	2518.6	5.34%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-1	-2.315e+00	0.3391	3.0	0.34%	58.2	0.12%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-2.277e+00	0.3489	3.0	0.34%	59.6	0.13%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-2.229e+00	0.3627	35.0	3.92%	1480.4	3.14%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-2.223e+00	0.3627	28.0	3.14%	1150.6	2.44%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-2.194e+00	0.3688	27.0	3.03%	1107.2	2.35%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-2.190e+00	0.3688	59.0	6.61%	2649.1	5.61%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-2.186e+00	0.3688	18.0	2.02%	692.4	1.47%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-2.168e+00	0.3688	3.0	0.34%	62.8	0.13%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-2.119e+00	0.3838	13.0	1.46%	474.1	1.00%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-2.035e+00	0.4134	12.0	1.35%	437.4	0.93%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-2.016e+00	0.4181	4.0	0.45%	103.8	0.22%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-2.009e+00	0.4181	262.0	29.37%	13051.2	27.66%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.955e+00	0.4367	50.0	5.61%	2256.2	4.78%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.904e+00	0.4556	29.0	3.25%	1244.6	2.64%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-1.899e+00	0.4556	67.0	7.51%	3111.2	6.59%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.853e+00	0.4715	40.0	4.48%	1786.4	3.79%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.835e+00	0.4760	6.0	0.67%	192.5	0.41%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.821e+00	0.4789	46.0	5.16%	2087.0	4.42%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.803e+00	0.4838	65.0	7.29%	3035.8	6.43%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.783e+00	0.4895	113.0	12.67%	5466.4	11.58%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.771e+00	0.4917	6.0	0.67%	196.3	0.42%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.768e+00	0.4917	3.0	0.34%	75.7	0.16%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.764e+00	0.4917	23.0	2.58%	978.0	2.07%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.734e+00	0.4985	19.0	2.13%	792.4	1.68%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.725e+00	0.4989	98.0	10.99%	4722.2	10.01%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.715e+00	0.5000	3.0	0.34%	78.0	0.17%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.709e+00	0.5000	27.0	3.03%	1179.8	2.50%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.673e+00	0.5138	10.0	1.12%	380.5	0.81%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.658e+00	0.5173	69.0	7.74%	3274.4	6.94%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.612e+00	0.5377	86.0	9.64%	4148.3	8.79%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.610e+00	0.5377	43.0	4.82%	1984.8	4.21%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.602e+00	0.5377	5.0	0.56%	164.9	0.35%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.594e+00	0.5377	23.0	2.58%	1004.0	2.13%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.581e+00	0.5391	81.0	9.08%	3904.4	8.27%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.571e+00	0.5406	11.0	1.23%	436.4	0.92%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.545e+00	0.5509	3.0	0.34%	84.4	0.18%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.532e+00	0.5539	96.0	10.76%	4684.7	9.93%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.522e+00	0.5556	3.0	0.34%	85.6	0.18%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-1.451e+00	0.5926	11.0	1.23%	449.8	0.95%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-1.439e+00	0.5954	4.0	0.45%	131.5	0.28%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.439e+00	0.5954	16.0	1.79%	689.5	1.46%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.413e+00	0.6027	121.0	13.57%	6012.3	12.74%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.400e+00	0.6067	8.0	0.90%	314.5	0.67%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.398e+00	0.6067	11.0	1.23%	455.1	0.96%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.389e+00	0.6067	80.0	8.97%	3915.9	8.30%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-1.373e+00	0.6107	25.0	2.80%	1140.3	2.42%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.352e+00	0.6193	65.0	7.29%	3161.7	6.70%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.350e+00	0.6193	121.0	13.57%	6038.6	12.80%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.329e+00	0.6256	6.0	0.67%	229.0	0.49%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.328e+00	0.6256	2.0	0.22%	53.0	0.11%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.327e+00	0.6256	14.0	1.57%	608.2	1.29%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.322e+00	0.6256	5.0	0.56%	183.2	0.39%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.316e+00	0.6256	19.0	2.13%	854.8	1.81%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.289e+00	0.6308	8.0	0.90%	325.2	0.69%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.251e+00	0.6508	13.0	1.46%	570.9	1.21%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.248e+00	0.6508	9.0	1.01%	377.2	0.80%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.245e+00	0.6508	16.0	1.79%	718.3	1.52%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.227e+00	0.6546	11.0	1.23%	476.9	1.01%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.207e+00	0.6597	4.0	0.45%	146.1	0.31%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.207e+00	0.6597	4.0	0.45%	146.1	0.31%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.195e+00	0.6636	5.0	0.56%	193.6	0.41%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.194e+00	0.6636	43.0	4.82%	2087.9	4.42%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.182e+00	0.6642	2.0	0.22%	59.7	0.13%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.179e+00	0.6642	4.0	0.45%	148.5	0.31%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-1.176e+00	0.6642	27.0	3.03%	1280.6	2.71%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.172e+00	0.6642	6.0	0.67%	242.5	0.51%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.171e+00	0.6642	5.0	0.56%	195.1	0.41%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.147e+00	0.6684	107.0	12.00%	5401.2	11.45%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.133e+00	0.6737	54.0	6.05%	2668.2	5.65%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.112e+00	0.6838	152.0	17.04%	7760.0	16.44%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.104e+00	0.6858	75.0	8.41%	3761.1	7.97%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.099e+00	0.6858	12.0	1.35%	543.6	1.15%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.093e+00	0.6858	66.0	7.40%	3300.1	6.99%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.091e+00	0.6858	20.0	2.24%	945.7	2.00%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.086e+00	0.6858	10.0	1.12%	446.7	0.95%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.080e+00	0.6858	3.0	0.34%	109.7	0.23%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.079e+00	0.6858	29.0	3.25%	1404.6	2.98%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.079e+00	0.6858	30.0	3.36%	1455.8	3.08%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.079e+00	0.6858	19.0	2.13%	897.3	1.90%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.070e+00	0.6858	5.0	0.56%	204.8	0.43%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.069e+00	0.6858	17.0	1.91%	798.1	1.69%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.051e+00	0.6858	20.0	2.24%	953.9	2.02%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.051e+00	0.6858	30.0	3.36%	1462.9	3.10%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-1.026e+00	0.6903	67.0	7.51%	3377.3	7.16%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.024e+00	0.6903	16.0	1.79%	756.5	1.60%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.017e+00	0.6903	13.0	1.46%	606.9	1.29%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.007e+00	0.6923	5.0	0.56%	210.3	0.45%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-9.913e-01	0.6999	47.0	5.27%	2354.9	4.99%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-9.815e-01	0.7032	2.0	0.22%	69.2	0.15%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-9.803e-01	0.7032	50.0	5.61%	2513.1	5.33%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-9.795e-01	0.7032	58.0	6.50%	2928.9	6.21%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-9.764e-01	0.7032	1.0	0.11%	26.0	0.06%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-9.423e-01	0.7165	10.0	1.12%	467.6	0.99%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-9.296e-01	0.7220	2.0	0.22%	72.2	0.15%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-9.184e-01	0.7265	29.0	3.25%	1446.1	3.06%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-9.168e-01	0.7265	1.0	0.11%	28.0	0.06%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-9.149e-01	0.7265	4.0	0.45%	170.3	0.36%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-9.020e-01	0.7275	47.0	5.27%	2385.1	5.05%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-8.909e-01	0.7321	81.0	9.08%	4164.2	8.82%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-8.891e-01	0.7321	71.0	7.96%	3642.1	7.72%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-8.881e-01	0.7321	18.0	2.02%	886.7	1.88%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-8.716e-01	0.7356	57.0	6.39%	2918.6	6.18%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-8.592e-01	0.7411	43.0	4.82%	2192.8	4.65%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-8.579e-01	0.7411	71.0	7.96%	3656.0	7.75%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-8.571e-01	0.7411	13.0	1.46%	635.9	1.35%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-8.542e-01	0.7411	3.0	0.34%	126.6	0.27%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-8.395e-01	0.7416	19.0	2.13%	949.3	2.01%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-8.370e-01	0.7416	67.0	7.51%	3456.4	7.32%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-8.312e-01	0.7416	3.0	0.34%	128.8	0.27%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-8.251e-01	0.7419	4.0	0.45%	179.5	0.38%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-8.152e-01	0.7458	5.0	0.56%	231.5	0.49%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-8.150e-01	0.7458	19.0	2.13%	955.0	2.02%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-8.089e-01	0.7458	3.0	0.34%	130.0	0.28%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-8.085e-01	0.7458	8.0	0.90%	386.4	0.82%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-7.789e-01	0.7593	2.0	0.22%	83.0	0.18%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-7.766e-01	0.7593	3.0	0.34%	133.4	0.28%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-7.762e-01	0.7593	70.0	7.85%	3642.4	7.72%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-7.628e-01	0.7613	155.0	17.38%	8129.4	17.23%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-7.554e-01	0.7635	59.0	6.61%	3073.8	6.51%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-7.508e-01	0.7635	28.0	3.14%	1444.3	3.06%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-7.482e-01	0.7635	51.0	5.72%	2655.1	5.63%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-7.426e-01	0.7635	103.0	11.55%	5399.7	11.44%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-7.368e-01	0.7641	13.0	1.46%	660.4	1.40%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-7.272e-01	0.7681	24.0	2.69%	1241.6	2.63%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-7.258e-01	0.7681	3.0	0.34%	138.2	0.29%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-7.255e-01	0.7681	1.0	0.11%	35.6	0.08%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-7.220e-01	0.7681	5.0	0.56%	243.2	0.52%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-7.220e-01	0.7681	5.0	0.56%	244.0	0.52%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-7.191e-01	0.7681	19.0	2.13%	980.4	2.08%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-7.057e-01	0.7681	1.0	0.11%	36.9	0.08%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-6.996e-01	0.7681	10.0	1.12%	510.1	1.08%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-6.995e-01	0.7681	28.0	3.14%	1461.4	3.10%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-6.850e-01	0.7710	10.0	1.12%	513.0	1.09%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-6.785e-01	0.7727	3.0	0.34%	143.7	0.30%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-6.595e-01	0.7843	29.0	3.25%	1528.6	3.24%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-6.573e-01	0.7843	22.0	2.47%	1157.1	2.45%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-6.551e-01	0.7843	9.0	1.01%	466.8	0.99%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-6.411e-01	0.7890	4.0	0.45%	201.5	0.43%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-6.400e-01	0.7890	11.0	1.23%	577.0	1.22%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-6.329e-01	0.7890	8.0	0.90%	417.9	0.89%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-6.198e-01	0.7961	17.0	1.91%	902.5	1.91%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-6.166e-01	0.7961	29.0	3.25%	1544.7	3.27%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-6.019e-01	0.8040	138.0	15.47%	7349.2	15.57%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-5.875e-01	0.8123	57.0	6.39%	3051.6	6.47%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-5.819e-01	0.8136	28.0	3.14%	1504.5	3.19%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-5.794e-01	0.8136	8.0	0.90%	428.5	0.91%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-5.789e-01	0.8136	19.0	2.13%	1022.3	2.17%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-5.782e-01	0.8136	20.0	2.24%	1076.3	2.28%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-5.778e-01	0.8136	14.0	1.57%	753.4	1.60%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-5.699e-01	0.8136	3.0	0.34%	156.0	0.33%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-5.697e-01	0.8136	6.0	0.67%	321.7	0.68%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-5.492e-01	0.8178	13.0	1.46%	707.4	1.50%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-5.409e-01	0.8215	62.0	6.95%	3345.2	7.09%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-5.370e-01	0.8215	5.0	0.56%	272.8	0.58%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-5.156e-01	0.8360	17.0	1.91%	935.6	1.98%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-4.966e-01	0.8487	47.0	5.27%	2566.4	5.44%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-4.924e-01	0.8487	12.0	1.35%	669.5	1.42%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-4.924e-01	0.8487	12.0	1.35%	669.5	1.42%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-4.901e-01	0.8487	29.0	3.25%	1597.8	3.39%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-4.855e-01	0.8487	3.0	0.34%	168.1	0.36%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-4.727e-01	0.8530	3.0	0.34%	170.0	0.36%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-4.664e-01	0.8551	3.0	0.34%	171.5	0.36%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-4.398e-01	0.8749	21.0	2.35%	1183.2	2.51%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-4.362e-01	0.8749	11.0	1.23%	631.4	1.34%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-4.334e-01	0.8749	27.0	3.03%	1515.8	3.21%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-4.318e-01	0.8749	13.0	1.46%	744.0	1.58%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-4.252e-01	0.8749	14.0	1.57%	802.2	1.70%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-4.250e-01	0.8749	6.0	0.67%	352.9	0.75%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-4.242e-01	0.8749	8.0	0.90%	466.7	0.99%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-4.178e-01	0.8749	11.0	1.23%	637.2	1.35%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-4.063e-01	0.8785	1.0	0.11%	58.1	0.12%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-3.868e-01	0.8925	89.0	9.98%	4912.4	10.41%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-3.855e-01	0.8925	141.0	15.81%	7711.7	16.34%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-3.766e-01	0.8953	12.0	1.35%	708.6	1.50%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-3.667e-01	0.9009	31.0	3.48%	1771.8	3.75%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-3.616e-01	0.9023	5.0	0.56%	310.8	0.66%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-3.613e-01	0.9023	11.0	1.23%	657.8	1.39%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-3.506e-01	0.9058	2.0	0.22%	130.3	0.28%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-3.428e-01	0.9097	18.0	2.02%	1061.8	2.25%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-3.395e-01	0.9097	78.0	8.74%	4361.7	9.24%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-3.378e-01	0.9097	22.0	2.47%	1288.7	2.73%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-3.180e-01	0.9228	8.0	0.90%	500.5	1.06%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-3.083e-01	0.9286	2.0	0.22%	138.1	0.29%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-2.955e-01	0.9372	5.0	0.56%	329.4	0.70%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-2.866e-01	0.9424	28.0	3.14%	1656.0	3.51%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-2.835e-01	0.9424	129.0	14.46%	7190.8	15.24%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-2.805e-01	0.9424	14.0	1.57%	865.7	1.83%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-2.804e-01	0.9424	11.0	1.23%	691.6	1.47%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-2.803e-01	0.9424	22.0	2.47%	1322.8	2.80%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.679e-01	0.9439	4.0	0.45%	276.5	0.59%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-2.635e-01	0.9449	6.0	0.67%	402.0	0.85%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-2.580e-01	0.9469	13.0	1.46%	819.6	1.74%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-2.443e-01	0.9567	77.0	8.63%	4410.9	9.35%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-2.241e-01	0.9730	4.0	0.45%	291.4	0.62%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-2.188e-01	0.9749	4.0	0.45%	293.8	0.62%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-2.166e-01	0.9749	15.0	1.68%	961.8	2.04%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-2.160e-01	0.9749	10.0	1.12%	665.9	1.41%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-2.145e-01	0.9749	3.0	0.34%	229.3	0.49%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-2.140e-01	0.9749	23.0	2.58%	1427.3	3.02%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-2.117e-01	0.9749	16.0	1.79%	1023.9	2.17%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-2.008e-01	0.9749	63.0	7.06%	3693.0	7.83%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.861e-01	0.9843	9.0	1.01%	622.7	1.32%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.839e-01	0.9843	34.0	3.81%	2085.0	4.42%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.787e-01	0.9852	18.0	2.02%	1166.8	2.47%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.709e-01	0.9897	2.0	0.22%	175.0	0.37%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.640e-01	0.9934	42.0	4.71%	2564.5	5.43%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.619e-01	0.9934	11.0	1.23%	761.1	1.61%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.540e-01	0.9969	4.0	0.45%	322.5	0.68%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.515e-01	0.9969	5.0	0.56%	390.6	0.83%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.515e-01	0.9969	5.0	0.56%	390.9	0.83%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.471e-01	0.9969	15.0	1.68%	1016.4	2.15%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.467e-01	0.9969	14.0	1.57%	956.8	2.03%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-1.463e-01	0.9969	7.0	0.78%	523.6	1.11%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.293e-01	1.0000	54.0	6.05%	3298.3	6.99%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.282e-01	1.0000	34.0	3.81%	2156.2	4.57%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.202e-01	1.0000	32.0	3.59%	2052.7	4.35%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.101e-01	1.0000	12.0	1.35%	870.0	1.84%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.096e-01	1.0000	17.0	1.91%	1178.4	2.50%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.054e-01	1.0000	8.0	0.90%	621.6	1.32%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.040e-01	1.0000	3.0	0.34%	282.1	0.60%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.005e-01	1.0000	1.0	0.11%	124.4	0.26%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-9.711e-02	1.0000	5.0	0.56%	429.1	0.91%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-9.644e-02	1.0000	2.0	0.22%	212.0	0.45%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-9.438e-02	1.0000	23.0	2.58%	1562.0	3.31%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-9.435e-02	1.0000	22.0	2.47%	1502.4	3.18%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-8.732e-02	1.0000	146.0	16.37%	8532.3	18.08%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-8.092e-02	1.0000	2.0	0.22%	222.2	0.47%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-8.092e-02	1.0000	2.0	0.22%	222.1	0.47%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-8.057e-02	1.0000	4.0	0.45%	374.8	0.79%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-7.917e-02	1.0000	23.0	2.58%	1589.4	3.37%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-7.716e-02	1.0000	7.0	0.78%	586.3	1.24%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-7.483e-02	1.0000	9.0	1.01%	722.6	1.53%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-6.787e-02	1.0000	2.0	0.22%	233.9	0.50%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-5.752e-02	1.0000	45.0	5.04%	2950.7	6.25%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-4.541e-02	1.0000	2.0	0.22%	258.4	0.55%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-4.040e-02	1.0000	65.0	7.29%	4185.3	8.87%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-3.191e-02	1.0000	13.0	1.46%	1078.2	2.28%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-2.379e-02	1.0000	1.0	0.11%	198.5	0.42%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-2.333e-02	1.0000	1.0	0.11%	199.9	0.42%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-2.219e-02	1.0000	12.0	1.35%	1050.0	2.23%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.684e-02	1.0000	1.0	0.11%	216.8	0.46%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.652e-02	1.0000	1.0	0.11%	217.7	0.46%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.005e-02	1.0000	1.0	0.11%	243.2	0.52%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-5.090e-03	1.0000	22.0	2.47%	1884.9	3.99%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-3.616e-03	1.0000	7.0	0.78%	850.8	1.80%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-1.636e-03	1.0000	79.0	8.86%	5602.7	11.87%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	0.000e+00	1.0000	0.0	0.00%	55.0	0.12%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	25.0	0.05%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	0.000e+00	1.0000	0.0	0.00%	89.4	0.19%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	0.000e+00	1.0000	0.0	0.00%	75.6	0.16%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	12.3	0.03%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	32.1	0.07%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	39.7	0.08%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	32.2	0.07%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	16.4	0.03%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	4.0	0.01%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	18.0	0.04%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	17.6	0.04%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	5.0	0.01%