Information for 5-TGGCAGCAGAGGA (Motif 4)

C G A T A C T G A T C G G T A C C G T A A T C G A G T C C G T A A T C G C T G A C T A G A T C G C G T A
Reverse Opposite:
G A C T A T G C A G T C A G C T A T G C A C G T C T A G A T G C A C G T A C T G A T G C A G T C C G T A
p-value:1e-12
log p-value:-2.769e+01
Information Content per bp:1.788
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.06%
Number of Background Sequences with motif11.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets60.0 +/- 18.6bp
Average Position of motif in Background52.4 +/- 20.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.58
Offset:1
Orientation:forward strand
Alignment:TGGCAGCAGAGGA
-CACAGCAGGGGG
 C G A T A C T G A T C G G T A C C G T A A T C G A G T C C G T A A T C G C T G A C T A G A T C G C G T A
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TGGCAGCAGAGGA--------
-GCCASCAGGGGGCGCYVNNG
 C G A T A C T G A T C G G T A C C G T A A T C G A G T C C G T A A T C G C T G A C T A G A T C G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TGGCAGCAGAGGA--
DCHCAGCAGGRGGCC
 C G A T A C T G A T C G G T A C C G T A A T C G A G T C C G T A A T C G C T G A C T A G A T C G C G T A A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

CTCF/MA0139.1/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGGCAGCAGAGGA-----
TGGCCACCAGGGGGCGCTA
 A C G T C G A T A C T G A T C G G T A C C G T A A T C G A G T C C G T A A T C G C T G A C T A G A T C G C G T A A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGCAGAGGA
CTTGGCAA-------
 A C G T A C G T C G A T A C T G A T C G G T A C C G T A A T C G A G T C C G T A A T C G C T G A C T A G A T C G C G T A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGCAGAGGA
TGAGTCAGCA-----
 A C G T A C G T C G A T A C T G A T C G G T A C C G T A A T C G A G T C C G T A A T C G C T G A C T A G A T C G C G T A
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TGGCAGCAGAGGA
CCACACAGCAGGAGA
 A C G T A C G T C G A T A C T G A T C G G T A C C G T A A T C G A G T C C G T A A T C G C T G A C T A G A T C G C G T A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGCAGAGGA
NTTGGCANN------
 A C G T A C G T C G A T A C T G A T C G G T A C C G T A A T C G A G T C C G T A A T C G C T G A C T A G A T C G C G T A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TGGCAGCAGAGGA
TTGGCA--------
 A C G T C G A T A C T G A T C G G T A C C G T A A T C G A G T C C G T A A T C G C T G A C T A G A T C G C G T A
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGCAGAGGA
SCTGTCARCACC---
 A C G T A C G T C G A T A C T G A T C G G T A C C G T A A T C G A G T C C G T A A T C G C T G A C T A G A T C G C G T A
T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C A C G T A C G T A C G T