Information for 3-KKAWCMAAGGTMT (Motif 9)

A C T G A C T G C G T A G C A T A G T C G T A C C G T A C G T A A C T G A C T G A G C T G T C A A C G T
Reverse Opposite:
C G T A A C G T C T G A A G T C A G T C A C G T A C G T A C T G A C T G C G A T A C G T G T A C G T A C
p-value:1e-6
log p-value:-1.539e+01
Information Content per bp:1.842
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif7.69%
Number of Background Sequences with motif13.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets47.7 +/- 22.1bp
Average Position of motif in Background48.9 +/- 46.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:KKAWCMAAGGTMT
GGAACAAAGR---
 A C T G A C T G C G T A G C A T A G T C G T A C C G T A C G T A A C T G A C T G A G C T G T C A A C G T
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:2
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:KKAWCMAAGGTMT
--AACAAAGG---
 A C T G A C T G C G T A G C A T A G T C G T A C C G T A C G T A A C T G A C T G A G C T G T C A A C G T
A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T

PB0040.1_Lef1_1/Jaspar

Match Rank:3
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---KKAWCMAAGGTMT-
NANAGATCAAAGGGNNN
 A C G T A C G T A C G T A C T G A C T G C G T A G C A T A G T C G T A C C G T A C G T A A C T G A C T G A G C T G T C A A C G T A C G T
A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:4
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---KKAWCMAAGGTMT-
NNNAGATCAAAGGANNN
 A C G T A C G T A C G T A C T G A C T G C G T A G C A T A G T C G T A C C G T A C G T A A C T G A C T G A G C T G T C A A C G T A C G T
A C G T G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C T A G C A T

PB0071.1_Sox4_1/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---KKAWCMAAGGTMT-
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T A C T G A C T G C G T A G C A T A G T C G T A C C G T A C G T A A C T G A C T G A G C T G T C A A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0061.1_Sox11_1/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---KKAWCMAAGGTMT-
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T A C T G A C T G C G T A G C A T A G T C G T A C C G T A C G T A A C T G A C T G A G C T G T C A A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0014.1_Esrra_1/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:forward strand
Alignment:KKAWCMAAGGTMT-----
-TATTCAAGGTCATGCGA
 A C T G A C T G C G T A G C A T A G T C G T A C C G T A C G T A A C T G A C T G A G C T G T C A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A

Sox3/MA0514.1/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:KKAWCMAAGGTMT
AAAACAAAGG---
 A C T G A C T G C G T A G C A T A G T C G T A C C G T A C G T A A C T G A C T G A G C T G T C A A C G T
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

PB0159.1_Rfx4_2/Jaspar

Match Rank:9
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---KKAWCMAAGGTMT
NNNGTAACTANGNNA-
 A C G T A C G T A C G T A C T G A C T G C G T A G C A T A G T C G T A C C G T A C G T A A C T G A C T G A G C T G T C A A C G T
A C G T A T G C A T C G A C T G G A C T G T C A C G T A G T A C A G C T G C T A C A T G A T C G T A C G C A G T C G T A A C G T

PB0082.1_Tcf3_1/Jaspar

Match Rank:10
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---KKAWCMAAGGTMT-
TATAGATCAAAGGAAAA
 A C G T A C G T A C G T A C T G A C T G C G T A G C A T A G T C G T A C C G T A C G T A A C T G A C T G A G C T G T C A A C G T A C G T
G A C T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G C T A G C T A G C T A