Information for 19-ATAAMWTWMSKWA (Motif 41)

C G T A A C G T C G T A C G T A T G C A C G T A A C G T C G T A T G A C A T G C A C G T C G T A C G T A
Reverse Opposite:
A C G T C G A T G T C A A T C G A C G T C G A T C G T A C G A T A C G T A C G T A C G T C G T A C G A T
p-value:1e-2
log p-value:-6.573e+00
Information Content per bp:1.783
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif5.13%
Number of Background Sequences with motif64.2
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets80.7 +/- 5.0bp
Average Position of motif in Background47.4 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0078.1_Hoxd13/Jaspar

Match Rank:1
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------ATAAMWTWMSKWA
CTACCAATAAAATTCT---
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A T G C A C G T A A C G T C G T A T G A C A T G C A C G T C G T A C G T A
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:2
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---ATAAMWTWMSKWA
GTCATAAAAN------
 A C G T A C G T A C G T C G T A A C G T C G T A C G T A T G C A C G T A A C G T C G T A T G A C A T G C A C G T C G T A C G T A
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---ATAAMWTWMSKWA
GCAATAAAA-------
 A C G T A C G T A C G T C G T A A C G T C G T A C G T A T G C A C G T A A C G T C G T A T G A C A T G C A C G T C G T A C G T A
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:4
Score:0.62
Offset:-7
Orientation:forward strand
Alignment:-------ATAAMWTWMSKWA
AAAGGTAATAAAATTT----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A T G C A C G T A A C G T C G T A T G A C A T G C A C G T C G T A C G T A
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T A C G T A C G T A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:5
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------ATAAMWTWMSKWA
AATGCAATAAAATTTAT--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A T G C A C G T A A C G T C G T A T G A C A T G C A C G T C G T A C G T A
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T A C G T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:6
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------ATAAMWTWMSKWA
AACCCAATAAAATTCG---
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A T G C A C G T A A C G T C G T A T G A C A T G C A C G T C G T A C G T A
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:7
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------ATAAMWTWMSKWA
AGAGCCATAAAATTCG---
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A T G C A C G T A A C G T C G T A T G A C A T G C A C G T C G T A C G T A
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----ATAAMWTWMSKWA
NCYAATAAAA-------
 A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A T G C A C G T A A C G T C G T A T G A C A T G C A C G T C G T A C G T A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---ATAAMWTWMSKWA
CCAATAAAAA------
 A C G T A C G T A C G T C G T A A C G T C G T A C G T A T G C A C G T A A C G T C G T A T G A C A T G C A C G T C G T A C G T A
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:10
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----ATAAMWTWMSKWA
AAGCCATAAAA-------
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T C G T A C G T A T G C A C G T A A C G T C G T A T G A C A T G C A C G T C G T A C G T A
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T