Information for 4-CCTAATCCTGAAAVAC (Motif 4)

A G T C A G T C A C G T C G T A C G T A A C G T G T A C A G T C A C G T A C T G C G T A C T G A G T C A T A C G C G T A A T G C
Reverse Opposite:
A T C G A C G T A C G T A C G T A G C T C G A T G T A C C G T A A C T G A C T G G T C A C G A T A C G T C G T A C T A G C T A G
p-value:1e-9
log p-value:-2.100e+01
Information Content per bp:1.758
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif7.69%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets35.0 +/- 19.2bp
Average Position of motif in Background39.7 +/- 7.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCTAATCCTGAAAVAC
NYTAATCCYB------
 A G T C A G T C A C G T C G T A C G T A A C G T G T A C A G T C A C G T A C T G C G T A C T G A G T C A T A C G C G T A A T G C
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CCTAATCCTGAAAVAC
-TTAATCCT-------
 A G T C A G T C A C G T C G T A C G T A A C G T G T A C A G T C A C G T A C T G C G T A C T G A G T C A T A C G C G T A A T G C
A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCTAATCCTGAAAVAC
GCTAATCC--------
 A G T C A G T C A C G T C G T A C G T A A C G T G T A C A G T C A C G T A C T G C G T A C T G A G T C A T A C G C G T A A T G C
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCTAATCCTGAAAVAC
CTTAATCCC-------
 A G T C A G T C A C G T C G T A C G T A A C G T G T A C A G T C A C G T A C T G C G T A C T G A G T C A T A C G C G T A A T G C
T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CCTAATCCTGAAAVAC
--TAATCCCN------
 A G T C A G T C A C G T C G T A C G T A A C G T G T A C A G T C A C G T A C T G C G T A C T G A G T C A T A C G C G T A A T G C
A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CCTAATCCTGAAAVAC
-TTAATCCC-------
 A G T C A G T C A C G T C G T A C G T A A C G T G T A C A G T C A C G T A C T G C G T A C T G A G T C A T A C G C G T A A T G C
A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CCTAATCCTGAAAVAC
-YTAATCCY-------
 A G T C A G T C A C G T C G T A C G T A A C G T G T A C A G T C A C G T A C T G C G T A C T G A G T C A T A C G C G T A A T G C
A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Dmbx1/MA0883.1/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCTAATCCTGAAAVAC
NNNATTAATCCGNTTNA--
 A C G T A C G T A C G T A G T C A G T C A C G T C G T A C G T A A C G T G T A C A G T C A C G T A C T G C G T A C T G A G T C A T A C G C G T A A T G C
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A A C G T A C G T

PH0025.1_Dmbx1/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCTAATCCTGAAAVAC
NNNATTAATCCGNTTNA--
 A C G T A C G T A C G T A G T C A G T C A C G T C G T A C G T A A C G T G T A C A G T C A C G T A C T G C G T A C T G A G T C A T A C G C G T A A T G C
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A A C G T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCTAATCCTGAAAVAC
CCTAATCCGC------
 A G T C A G T C A C G T C G T A C G T A A C G T G T A C A G T C A C G T A C T G C G T A C T G A G T C A T A C G C G T A A T G C
T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C A C G T A C G T A C G T A C G T A C G T A C G T