Information for 23-TAGCAAGACTTGAGAA (Motif 39)

A C G T C G T A A C T G A G T C C G T A C G T A A C T G C G T A A G T C A C G T A C G T A C T G C G T A A C T G C G T A C G T A
Reverse Opposite:
A C G T A C G T A G T C A C G T A G T C C G T A C G T A A C T G A C G T A G T C A C G T A C G T A C T G A G T C A C G T C G T A
p-value:1e-3
log p-value:-7.069e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif2.56%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0111.1_Nkx2-2/Jaspar

Match Rank:1
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TAGCAAGACTTGAGAA--
-ATAACCACTTGAAAATT
 A C G T C G T A A C T G A G T C C G T A C G T A A C T G C G T A A G T C A C G T A C G T A C T G C G T A A C T G C G T A C G T A A C G T A C G T
A C G T G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:2
Score:0.51
Offset:8
Orientation:reverse strand
Alignment:TAGCAAGACTTGAGAA--
--------CSTGGGAAAD
 A C G T C G T A A C T G A G T C C G T A C G T A A C T G C G T A A G T C A C G T A C G T A C T G C G T A A C T G C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--TAGCAAGACTTGAGAA
CAAATCCAGACATCACA-
 A C G T A C G T A C G T C G T A A C T G A G T C C G T A C G T A A C T G C G T A A G T C A C G T A C G T A C T G C G T A A C T G C G T A C G T A
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:4
Score:0.49
Offset:5
Orientation:forward strand
Alignment:TAGCAAGACTTGAGAA
-----CCACTTGAA--
 A C G T C G T A A C T G A G T C C G T A C G T A A C T G C G T A A G T C A C G T A C G T A C T G C G T A A C T G C G T A C G T A
A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T A C G T

Mecom/MA0029.1/Jaspar

Match Rank:5
Score:0.48
Offset:4
Orientation:forward strand
Alignment:TAGCAAGACTTGAGAA--
----AAGATAAGATAACA
 A C G T C G T A A C T G A G T C C G T A C G T A A C T G C G T A A G T C A C G T A C G T A C T G C G T A A C T G C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C G T A A C T G C G T A G A C T C G T A C T G A A C T G C G T A A G C T G C T A C T G A A C G T G T C A

NKX2-3/MA0672.1/Jaspar

Match Rank:6
Score:0.47
Offset:4
Orientation:forward strand
Alignment:TAGCAAGACTTGAGAA
----ACCACTTGAA--
 A C G T C G T A A C T G A G T C C G T A C G T A A C T G C G T A A G T C A C G T A C G T A C T G C G T A A C T G C G T A C G T A
A C G T A C G T A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:7
Score:0.46
Offset:-9
Orientation:forward strand
Alignment:---------TAGCAAGACTTGAGAA
TGTGACCCTTAGCAACCGATTAA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C C G T A C G T A A C T G C G T A A G T C A C G T A C G T A C T G C G T A A C T G C G T A C G T A
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:8
Score:0.45
Offset:-5
Orientation:forward strand
Alignment:-----TAGCAAGACTTGAGAA
TACCATAGCAACGGT------
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C C G T A C G T A A C T G C G T A A G T C A C G T A C G T A C T G C G T A A C T G C G T A C G T A
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T A C G T A C G T A C G T A C G T A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.45
Offset:-3
Orientation:forward strand
Alignment:---TAGCAAGACTTGAGAA
SCCTAGCAACAG-------
 A C G T A C G T A C G T A C G T C G T A A C T G A G T C C G T A C G T A A C T G C G T A A G T C A C G T A C G T A C T G C G T A A C T G C G T A C G T A
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0139.1_Irf5_2/Jaspar

Match Rank:10
Score:0.45
Offset:-2
Orientation:forward strand
Alignment:--TAGCAAGACTTGAGAA
TTGACCGAGAATTCC---
 A C G T A C G T A C G T C G T A A C T G A G T C C G T A C G T A A C T G C G T A A G T C A C G T A C G T A C T G C G T A A C T G C G T A C G T A
A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C A C G T A C G T A C G T