Information for 6-CGAATATATA (Motif 31)

A G T C A C T G C G T A C G T A A C G T C G T A A C G T C G T A A C G T C G T A
Reverse Opposite:
A C G T C G T A A C G T C G T A A C G T C G T A A C G T A C G T A G T C A C T G
p-value:1e-3
log p-value:-7.069e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif2.56%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.0 +/- 0.0bp
Average Position of motif in Background81.0 +/- 8.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0163.1_Six6_2/Jaspar

Match Rank:1
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---CGAATATATA----
ANNNGGATATATCCNNN
 A C G T A C G T A C G T A G T C A C T G C G T A C G T A A C G T C G T A A C G T C G T A A C G T C G T A A C G T A C G T A C G T A C G T
G T C A C T A G C T A G A G T C T C A G C A T G T C G A A C G T T G C A A G C T C T G A A G C T T G A C A T G C T A G C G C T A A C G T

PB0080.1_Tbp_1/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CGAATATATA----
TCTTTATATATAAATA
 A C G T A C G T A G T C A C T G C G T A C G T A A C G T C G T A A C G T C G T A A C G T C G T A A C G T A C G T A C G T A C G T
A G C T A G T C G C A T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A G T C A C A G T T C G A

PB0186.1_Tcf3_2/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CGAATATATA--
AGCCGAAAAAAAAAT
 A C G T A C G T A C G T A G T C A C T G C G T A C G T A A C G T C G T A A C G T C G T A A C G T C G T A A C G T A C G T
C T G A T A C G A T G C T A G C A C T G C G T A C T G A G C T A G C T A G C T A T G C A G C T A T C G A G C T A G C A T

POL012.1_TATA-Box/Jaspar

Match Rank:4
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CGAATATATA-
NNNNNNCTTTTATAN
 A C G T A C G T A C G T A C G T A G T C A C T G C G T A C G T A A C G T C G T A A C G T C G T A A C G T C G T A A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

TBP/MA0108.2/Jaspar

Match Rank:5
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CGAATATATA-
NNNNNNCTTTTATAN
 A C G T A C G T A C G T A C G T A G T C A C T G C G T A C G T A A C G T C G T A A C G T C G T A A C G T C G T A A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

PB0198.1_Zfp128_2/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CGAATATATA----
TGTATATATATACC
 A G T C A C T G C G T A C G T A A C G T C G T A A C G T C G T A A C G T C G T A A C G T A C G T A C G T A C G T
C A G T C A T G G C A T C T G A G C A T C T G A G A C T C G T A G A C T C G T A G A C T C G T A T G A C A T G C

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CGAATATATA-
-GAATATTCAT
 A G T C A C T G C G T A C G T A A C G T C G T A A C G T C G T A A C G T C G T A A C G T
A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:8
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CGAATATATA-
-GHATATKCAT
 A G T C A C T G C G T A C G T A A C G T C G T A A C G T C G T A A C G T C G T A A C G T
A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T

Arid5a/MA0602.1/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CGAATATATA----
CTAATATTGCTAAA
 A G T C A C T G C G T A C G T A A C G T C G T A A C G T C G T A A C G T C G T A A C G T A C G T A C G T A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CGAATATATA----
CTAATATTGCTAAA
 A G T C A C T G C G T A C G T A A C G T C G T A A C G T C G T A A C G T C G T A A C G T A C G T A C G T A C G T
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A