Information for 18-CHAHATGTDHATATTC (Motif 27)

A G T C G C A T C G T A G C T A G T C A C G A T C T A G A C G T C A G T G A C T C G T A A G C T C G T A A C G T A G C T G T A C
Reverse Opposite:
A C T G C T G A G T C A C G A T C T G A A C G T C T G A G C T A C G T A A G T C C G T A A C G T C A G T A C G T C G T A C T A G
p-value:1e-4
log p-value:-9.663e+00
Information Content per bp:1.676
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif10.26%
Number of Background Sequences with motif251.2
Percentage of Background Sequences with motif0.55%
Average Position of motif in Targets51.4 +/- 20.3bp
Average Position of motif in Background49.4 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXB1/MA0845.1/Jaspar

Match Rank:1
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CHAHATGTDHATATTC
---TATGTAAATAT--
 A G T C G C A T C G T A G C T A G T C A C G A T C T A G A C G T C A G T G A C T C G T A A G C T C G T A A C G T A G C T G T A C
A C G T A C G T A C G T G C A T C T G A C G A T C T A G G A C T T G C A G C T A C G T A A G C T C T G A G C A T A C G T A C G T

FOXC1/MA0032.2/Jaspar

Match Rank:2
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CHAHATGTDHATATTC
---TATGTAAATAT--
 A G T C G C A T C G T A G C T A G T C A C G A T C T A G A C G T C A G T G A C T C G T A A G C T C G T A A C G T A G C T G T A C
A C G T A C G T A C G T G C A T C T G A C G A T T C A G G C A T G T C A G T C A C T G A A G C T C T G A G C A T A C G T A C G T

PH0086.1_Irx5/Jaspar

Match Rank:3
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CHAHATGTDHATATTC
ANTNNTACATGTANNTN---
 A C G T A C G T A C G T A C G T A G T C G C A T C G T A G C T A G T C A C G A T C T A G A C G T C A G T G A C T C G T A A G C T C G T A A C G T A G C T G T A C
G C T A G T C A G C A T G C A T C A G T C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A C G A T G C T A G C A T G C A T A C G T A C G T A C G T

PH0082.1_Irx2/Jaspar

Match Rank:4
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CHAHATGTDHATATTC
ANTNTTACATGTATNTA---
 A C G T A C G T A C G T A C G T A G T C G C A T C G T A G C T A G T C A C G A T C T A G A C G T C A G T G A C T C G T A A G C T C G T A A C G T A G C T G T A C
C G T A T G C A G C A T G A C T G A C T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A G A C T G C A T C G A T G C T A A C G T A C G T A C G T

PH0087.1_Irx6/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CHAHATGTDHATATTC
AAAATACATGTAAAAAT--
 A C G T A C G T A C G T A G T C G C A T C G T A G C T A G T C A C G A T C T A G A C G T C A G T G A C T C G T A A G C T C G T A A C G T A G C T G T A C
G C T A G C T A G C T A C T G A C G A T C G T A A G T C C G T A G C A T C T A G C G A T G C T A G T C A C G T A C G T A G C T A C G A T A C G T A C G T

PH0084.1_Irx3_2/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CHAHATGTDHATATTC
NNTATTACATGTANNNT---
 A C G T A C G T A C G T A C G T A G T C G C A T C G T A G C T A G T C A C G A T C T A G A C G T C A G T G A C T C G T A A G C T C G T A A C G T A G C T G T A C
G C A T C T G A G C A T G C T A A C G T C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A C G A T G C T A G C A T G C A T A C G T A C G T A C G T

FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer

Match Rank:7
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CHAHATGTDHATATTC
---CBTGTTTAYAWW-
 A G T C G C A T C G T A G C T A G T C A C G A T C T A G A C G T C A G T G A C T C G T A A G C T C G T A A C G T A G C T G T A C
A C G T A C G T A C G T A T G C A C G T A C G T C T A G A C G T A C G T A C G T C G T A A G T C G C T A C G A T G C A T A C G T

PB0026.1_Gm397_1/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CHAHATGTDHATATTC--
-CAGATGTGCACATACGT
 A G T C G C A T C G T A G C T A G T C A C G A T C T A G A C G T C A G T G A C T C G T A A G C T C G T A A C G T A G C T G T A C A C G T A C G T
A C G T G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:9
Score:0.59
Offset:6
Orientation:forward strand
Alignment:CHAHATGTDHATATTC
------ATGMATATDC
 A G T C G C A T C G T A G C T A G T C A C G A T C T A G A C G T C A G T G A C T C G T A A G C T C G T A A C G T A G C T G T A C
A C G T A C G T A C G T A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

PH0085.1_Irx4/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----CHAHATGTDHATATTC
NNTTTTACATGTANNNT---
 A C G T A C G T A C G T A C G T A G T C G C A T C G T A G C T A G T C A C G A T C T A G A C G T C A G T G A C T C G T A A G C T C G T A A C G T A G C T G T A C
G C A T T A C G G C A T G C A T C A G T C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G A C T C G T A G C A T G C A T A C G T A C G T A C G T