Information for 14-RTTTAWAAAWAWGMTA (Motif 20)

C T A G A C G T A G C T A G C T C T G A C G A T C T G A G T C A T C G A C G A T C G T A C G A T C T A G G T A C C G A T C G T A
Reverse Opposite:
C G A T C G T A A C T G G A T C G C T A C G A T C G T A A C G T C A G T A G C T C G T A A G C T C T G A C T G A C G T A A G T C
p-value:1e-5
log p-value:-1.262e+01
Information Content per bp:1.657
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif17.95%
Number of Background Sequences with motif759.4
Percentage of Background Sequences with motif1.66%
Average Position of motif in Targets57.9 +/- 29.8bp
Average Position of motif in Background48.7 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-RTTTAWAAAWAWGMTA
NATTCAAAT--------
 A C G T C T A G A C G T A G C T A G C T C T G A C G A T C T G A G T C A T C G A C G A T C G T A C G A T C T A G G T A C C G A T C G T A
C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0080.1_Tbp_1/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---RTTTAWAAAWAWGMTA
TCTTTATATATAAATA---
 A C G T A C G T A C G T C T A G A C G T A G C T A G C T C T G A C G A T C T G A G T C A T C G A C G A T C G T A C G A T C T A G G T A C C G A T C G T A
A G C T A G T C G C A T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A G T C A C A G T T C G A A C G T A C G T A C G T

Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--RTTTAWAAAWAWGMTA
NTGTTTAYATWW------
 A C G T A C G T C T A G A C G T A G C T A G C T C T G A C G A T C T G A G T C A T C G A C G A T C G T A C G A T C T A G G T A C C G A T C G T A
C A G T A C G T C T A G A C G T A C G T A C G T C G T A A G C T T G C A G A C T C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:4
Score:0.60
Offset:-7
Orientation:reverse strand
Alignment:-------RTTTAWAAAWAWGMTA
NNNNNNCTTTTATAN--------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C G T A G C T A G C T C T G A C G A T C T G A G T C A T C G A C G A T C G T A C G A T C T A G G T A C C G A T C G T A
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0116.1_Elf3_2/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:RTTTAWAAAWAWGMTA-
GTTCAAAAAAAAAATTC
 C T A G A C G T A G C T A G C T C T G A C G A T C T G A G T C A T C G A C G A T C G T A C G A T C T A G G T A C C G A T C G T A A C G T
C A T G A G C T A C G T G T A C G T C A C G T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G T C A G A C T C G A T G A T C

TBP/MA0108.2/Jaspar

Match Rank:6
Score:0.60
Offset:-7
Orientation:reverse strand
Alignment:-------RTTTAWAAAWAWGMTA
NNNNNNCTTTTATAN--------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C G T A G C T A G C T C T G A C G A T C T G A G T C A T C G A C G A T C G T A C G A T C T A G G T A C C G A T C G T A
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer

Match Rank:7
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---RTTTAWAAAWAWGMTA
CBTGTTTAYAWW-------
 A C G T A C G T A C G T C T A G A C G T A G C T A G C T C T G A C G A T C T G A G T C A T C G A C G A T C G T A C G A T C T A G G T A C C G A T C G T A
A T G C A C G T A C G T C T A G A C G T A C G T A C G T C G T A A G T C G C T A C G A T G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0182.1_Srf_2/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:RTTTAWAAAWAWGMTA-
GTTAAAAAAAAAAATTA
 C T A G A C G T A G C T A G C T C T G A C G A T C T G A G T C A T C G A C G A T C G T A C G A T C T A G G T A C C G A T C G T A A C G T
T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T

PB0129.1_Glis2_2/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-RTTTAWAAAWAWGMTA
TCTTTANTAATANN---
 A C G T C T A G A C G T A G C T A G C T C T G A C G A T C T G A G T C A T C G A C G A T C G T A C G A T C T A G G T A C C G A T C G T A
A G C T A G T C C A G T G C A T C G A T C G T A C G A T G A C T G T C A C G T A G A C T T G C A G C A T C G A T A C G T A C G T A C G T

PB0019.1_Foxl1_1/Jaspar

Match Rank:10
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------RTTTAWAAAWAWGMTA
NNNTTTGTTTACATTTN-----
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A C G T A G C T A G C T C T G A C G A T C T G A G T C A T C G A C G A T C G T A C G A T C T A G G T A C C G A T C G T A
T G C A A G T C A T G C G C A T C G A T C G A T C T A G A G C T C G A T A C G T C G T A G A T C C G T A G C A T C G A T G C A T G C T A A C G T A C G T A C G T A C G T A C G T