Information for 3-AATDHCCAATTATTAT (Motif 6)

C G T A C G T A A C G T C A G T G A T C A G T C A G T C G T C A C G T A C G A T C G A T T C G A A C G T A C G T C T G A G A C T
Reverse Opposite:
C T G A A G C T C G T A C G T A A G C T C G T A G C T A A C G T A C G T A C T G A C T G C T A G G C T A C G T A A C G T A C G T
p-value:1e-10
log p-value:-2.339e+01
Information Content per bp:1.810
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.25%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets33.0 +/- 3.9bp
Average Position of motif in Background61.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0061.1_Hoxb6/Jaspar

Match Rank:1
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----AATDHCCAATTATTAT
NNNGTAATTACNNATA-----
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T C A G T G A T C A G T C A G T C G T C A C G T A C G A T C G A T T C G A A C G T A C G T C T G A G A C T
T C G A G T C A A T C G C A T G A G C T G T C A C G T A C G A T C A G T C T G A T G A C T A G C G T C A G C T A C G A T C G T A A C G T A C G T A C G T A C G T A C G T

MF0010.1_Homeobox_class/Jaspar

Match Rank:2
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:AATDHCCAATTATTAT
-------AATTATT--
 C G T A C G T A A C G T C A G T G A T C A G T C A G T C G T C A C G T A C G A T C G A T T C G A A C G T A C G T C T G A G A C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T A C G T

PH0005.1_Barhl1/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AATDHCCAATTATTAT
AACAACCAATTAATTC
 C G T A C G T A A C G T C A G T G A T C A G T C A G T C G T C A C G T A C G A T C G A T T C G A A C G T A C G T C T G A G A C T
G T C A C T G A G T A C T C G A C T G A A T G C G A T C C T G A G C T A A C G T G A C T C G T A C T G A A C G T C G A T G A T C

PB0069.1_Sox21_1/Jaspar

Match Rank:4
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:AATDHCCAATTATTAT----
----NNTAATTATAATNANN
 C G T A C G T A A C G T C A G T G A T C A G T C A G T C G T C A C G T A C G A T C G A T T C G A A C G T A C G T C T G A G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C G C A T G C A T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C G A T C G T A C G T A C G T A

PB0064.1_Sox14_1/Jaspar

Match Rank:5
Score:0.55
Offset:4
Orientation:forward strand
Alignment:AATDHCCAATTATTAT----
----GCTAATTATAATTATC
 C G T A C G T A A C G T C A G T G A T C A G T C A G T C G T C A C G T A C G A T C G A T T C G A A C G T A C G T C T G A G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G G A T C G A C T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C A G T G T A C

PH0022.1_Dlx3/Jaspar

Match Rank:6
Score:0.54
Offset:3
Orientation:forward strand
Alignment:AATDHCCAATTATTAT----
---TCGCGATAATTACCGAC
 C G T A C G T A A C G T C A G T G A T C A G T C A G T C G T C A C G T A C G A T C G A T T C G A A C G T A C G T C T G A G A C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C T C A G T G A C C A G T C T G A A G C T C G T A C G T A A C G T C A G T C T G A A G T C G T A C T A C G G C T A G T A C

Sox5/MA0087.1/Jaspar

Match Rank:7
Score:0.54
Offset:8
Orientation:forward strand
Alignment:AATDHCCAATTATTAT
--------ATTGTTA-
 C G T A C G T A A C G T C A G T G A T C A G T C A G T C G T C A C G T A C G A T C G A T T C G A A C G T A C G T C T G A G A C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T A C G T

PH0055.1_Hoxa7_2/Jaspar

Match Rank:8
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:AATDHCCAATTATTAT---
---TNCCATTAATTACTNC
 C G T A C G T A A C G T C A G T G A T C A G T C A G T C G T C A C G T A C G A T C G A T T C G A A C G T A C G T C T G A G A C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T A T G C A G T C T G C A A C G T G C A T G T C A C G T A A C G T C A G T C G T A T G A C A C G T T G C A T G A C

PB0065.1_Sox15_1/Jaspar

Match Rank:9
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:AATDHCCAATTATTAT---
--ANNTCTATTGTTCNNNA
 C G T A C G T A A C G T C A G T G A T C A G T C A G T C G T C A C G T A C G A T C G A T T C G A A C G T A C G T C T G A G A C T A C G T A C G T A C G T
A C G T A C G T C G T A C G T A T C G A A G C T G A T C G C A T C G T A C G A T C G A T C T A G C G A T G A C T G T A C G C T A G T A C G A C T C G T A

SOX9/MA0077.1/Jaspar

Match Rank:10
Score:0.54
Offset:6
Orientation:forward strand
Alignment:AATDHCCAATTATTAT
------CCATTGTTC-
 C G T A C G T A A C G T C A G T G A T C A G T C A G T C G T C A C G T A C G A T C G A T T C G A A C G T A C G T C T G A G A C T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T