Information for 5-TTTGCATTTDAVT (Motif 13)

A C G T A C G T A C G T A C T G A G T C C G T A A C G T A G C T A C G T C A G T G T C A T C G A A C G T
Reverse Opposite:
C G T A A G C T C A G T G C T A C G T A C T G A C G T A A C G T A C T G A G T C C G T A C G T A C G T A
p-value:1e-8
log p-value:-2.005e+01
Information Content per bp:1.856
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif2.19%
Number of Background Sequences with motif31.6
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets50.1 +/- 22.4bp
Average Position of motif in Background56.0 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU2F2/MA0507.1/Jaspar

Match Rank:1
Score:0.79
Offset:-4
Orientation:forward strand
Alignment:----TTTGCATTTDAVT
TTCATTTGCATAT----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T A G C T A C G T C A G T G T C A T C G A A C G T
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T A C G T A C G T A C G T A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-TTTGCATTTDAVT
ATTTGCATAT----
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T A G C T A C G T C A G T G T C A T C G A A C G T
G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T A C G T A C G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-TTTGCATTTDAVT
ATTTGCATAA----
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T A G C T A C G T C A G T G T C A T C G A A C G T
C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A A C G T A C G T A C G T A C G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-TTTGCATTTDAVT-
ATTTGCATAACAATG
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T A G C T A C G T C A G T G T C A T C G A A C G T A C G T
G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----TTTGCATTTDAVT
BTVATTWGCATA-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T A G C T A C G T C A G T G T C A T C G A A C G T
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T A C G T A C G T A C G T A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:6
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----TTTGCATTTDAVT
TNTAATTTGCATANNN--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T A G C T A C G T C A G T G T C A T C G A A C G T
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A A C G T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:7
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----TTTGCATTTDAVT
TNTAATTTGCATACNA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T A G C T A C G T C A G T G T C A T C G A A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A A C G T A C G T

PH0145.1_Pou2f3/Jaspar

Match Rank:8
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----TTTGCATTTDAVT
TNTAATTTGCATACNA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T A G C T A C G T C A G T G T C A T C G A A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A A C G T A C G T

POU2F1/MA0785.1/Jaspar

Match Rank:9
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--TTTGCATTTDAVT
AATTTGCATANT---
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T A G C T A C G T C A G T G T C A T C G A A C G T
G T C A G C T A G C A T G A C T G C A T T C A G G T A C T C G A G C A T C T G A G C A T C G A T A C G T A C G T A C G T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:10
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-TTTGCATTTDAVT-
ATTTGCATAACAAAG
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T A G C T A C G T C A G T G T C A T C G A A C G T A C G T
G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G