Information for 2-TTCTTGGCAAGTC (Motif 5)

A C G T C G A T A G T C A G C T A C G T A C T G A C T G A G T C G C T A C G T A A T C G A C G T A T G C
Reverse Opposite:
T A C G T G C A T A G C G A C T C A G T A C T G T A G C G T A C G T C A C T G A C T A G C G T A G T C A
p-value:1e-9
log p-value:-2.205e+01
Information Content per bp:1.697
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif4.07%
Number of Background Sequences with motif201.7
Percentage of Background Sequences with motif0.41%
Average Position of motif in Targets45.4 +/- 25.6bp
Average Position of motif in Background52.3 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:TTCTTGGCAAGTC
--NTTGGCANN--
 A C G T C G A T A G T C A G C T A C G T A C T G A C T G A G T C G C T A C G T A A T C G A C G T A T G C
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:TTCTTGGCAAGTC
-NNTTGGCANN--
 A C G T C G A T A G T C A G C T A C G T A C T G A C T G A G T C G C T A C G T A A T C G A C G T A T G C
A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:TTCTTGGCAAGTC
--CTTGGCAA---
 A C G T C G A T A G T C A G C T A C G T A C T G A C T G A G T C G C T A C G T A A T C G A C G T A T G C
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.72
Offset:3
Orientation:forward strand
Alignment:TTCTTGGCAAGTC
---TTGGCA----
 A C G T C G A T A G T C A G C T A C G T A C T G A C T G A G T C G C T A C G T A A T C G A C G T A T G C
A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TTCTTGGCAAGTC
TTCTTGGAAAN--
 A C G T C G A T A G T C A G C T A C G T A C T G A C T G A G T C G C T A C G T A A T C G A C G T A T G C
A G C T C G A T A G T C G A C T C A G T C T A G C T A G C T G A C G T A T C G A G A C T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TTCTTGGCAAGTC
TGATTGGCTANN-
 A C G T C G A T A G T C A G C T A C G T A C T G A C T G A G T C G C T A C G T A A T C G A C G T A T G C
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T A C G T

STAT3/MA0144.2/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TTCTTGGCAAGTC
CTTCTGGGAAA---
 A C G T A C G T C G A T A G T C A G C T A C G T A C T G A C T G A G T C G C T A C G T A A T C G A C G T A T G C
A G T C C G A T A C G T G A T C G A C T C A T G C T A G C T A G C G T A C G T A C T G A A C G T A C G T A C G T

Stat4/MA0518.1/Jaspar

Match Rank:8
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TTCTTGGCAAGTC
NNNTTTCCTGGAAA---
 A C G T A C G T A C G T A C G T A C G T C G A T A G T C A G C T A C G T A C T G A C T G A G T C G C T A C G T A A T C G A C G T A T G C
A G T C A T G C T C G A A G C T A C G T A C G T A G T C G A T C G A C T C T A G A C T G G T C A C G T A T C G A A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TTCTTGGCAAGTC
-TNNGGGCAG---
 A C G T C G A T A G T C A G C T A C G T A C T G A C T G A G T C G C T A C G T A A T C G A C G T A T G C
A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T

PB0145.1_Mafb_2/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TTCTTGGCAAGTC
ANATTTTTGCAANTN
 A C G T A C G T A C G T C G A T A G T C A G C T A C G T A C T G A C T G A G T C G C T A C G T A A T C G A C G T A T G C
C G T A G A C T C G T A C G A T G C A T C G A T G C A T A G C T C T A G T A G C T G C A T G C A G C A T A G C T C A T G