Information for 1-CCAACAACAA (Motif 3)

A G T C G A T C C G T A C G T A A G T C C G T A T C G A A G T C C G T A T G C A
Reverse Opposite:
A C G T C G A T C T A G A G C T A C G T A C T G A C G T A C G T C T A G T C A G
p-value:1e-11
log p-value:-2.654e+01
Information Content per bp:1.848
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif3.78%
Number of Background Sequences with motif114.6
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets57.2 +/- 25.4bp
Average Position of motif in Background51.2 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0093.1_Zfp105_1/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--CCAACAACAA---
AACAAACAACAAGAG
 A C G T A C G T A G T C G A T C C G T A C G T A A G T C C G T A T C G A A G T C C G T A T G C A A C G T A C G T A C G T
G C T A C G T A G A T C G T C A C G T A G C T A G A T C C T G A C G T A G T A C C T G A G C T A C A T G C G T A C T A G

PB0122.1_Foxk1_2/Jaspar

Match Rank:2
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---CCAACAACAA--
CAAACAACAACACCT
 A C G T A C G T A C G T A G T C G A T C C G T A C G T A A G T C C G T A T C G A A G T C C G T A T G C A A C G T A C G T
G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T

PB0120.1_Foxj1_2/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CCAACAACAA---
ATGTCACAACAACAC
 A C G T A C G T A G T C G A T C C G T A C G T A A G T C C G T A T C G A A G T C C G T A T G C A A C G T A C G T A C G T
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C

PB0172.1_Sox1_2/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CCAACAACAA---
NNNTAACAATTATAN
 A C G T A C G T A G T C G A T C C G T A C G T A A G T C C G T A T C G A A G T C C G T A T G C A A C G T A C G T A C G T
A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCAACAACAA
NAAACCACAG
 A G T C G A T C C G T A C G T A A G T C C G T A T C G A A G T C C G T A T G C A
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:6
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CCAACAACAA-
-AAACCACANN
 A G T C G A T C C G T A C G T A A G T C C G T A T C G A A G T C C G T A T G C A A C G T
A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A

RUNX3/MA0684.1/Jaspar

Match Rank:7
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CCAACAACAA-
-AAACCGCAAA
 A G T C G A T C C G T A C G T A A G T C C G T A T C G A A G T C C G T A T G C A A C G T
A C G T G C T A T C G A T G C A G T A C A T G C T C A G A T G C T G C A T C G A G C T A

PB0119.1_Foxa2_2/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CCAACAACAA----
AAAAATAACAAACGG
 A C G T A G T C G A T C C G T A C G T A A G T C C G T A T C G A A G T C C G T A T G C A A C G T A C G T A C G T A C G T
T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

PB0123.1_Foxl1_2/Jaspar

Match Rank:9
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CCAACAACAA-
ATATCAAAACAAAACA
 A C G T A C G T A C G T A C G T A C G T A G T C G A T C C G T A C G T A A G T C C G T A T C G A A G T C C G T A T G C A A C G T
G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A

RUNX2/MA0511.2/Jaspar

Match Rank:10
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CCAACAACAA
-AAACCGCAA
 A G T C G A T C C G T A C G T A A G T C C G T A T C G A A G T C C G T A T G C A
A C G T G C T A C T G A G T C A A G T C A G T C C T A G A G T C T G C A T C G A