Information for 1-TWTAWTAADAATTAAW (Motif 2)

A C G T C G A T C G A T C G T A C G T A C A G T C G T A G T C A C G T A G T C A C G T A G A C T A C G T C G T A C G T A G C A T
Reverse Opposite:
C G T A C G A T A C G T G T C A C T G A A C G T A C G T G C A T C A G T A C G T G C T A G C A T A C G T C G T A G C T A C G T A
p-value:1e-12
log p-value:-2.822e+01
Information Content per bp:1.727
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif3.20%
Number of Background Sequences with motif57.8
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets48.2 +/- 18.7bp
Average Position of motif in Background48.0 +/- 21.9bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0108.1_Msx3/Jaspar

Match Rank:1
Score:0.67
Offset:2
Orientation:forward strand
Alignment:TWTAWTAADAATTAAW--
--CAAAACCAATTAATTT
 A C G T C G A T C G A T C G T A C G T A C A G T C G T A G T C A C G T A G T C A C G T A G A C T A C G T C G T A C G T A G C A T A C G T A C G T
A C G T A C G T T G A C T C G A G T C A C T G A T C G A A T G C A G T C C T G A G T C A C G A T G A C T C G T A C T G A A C G T G A C T G C A T

PH0019.1_Dbx2/Jaspar

Match Rank:2
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:TWTAWTAADAATTAAW----
----NAATTAATTAATTNNN
 A C G T C G A T C G A T C G T A C G T A C A G T C G T A G T C A C G T A G T C A C G T A G A C T A C G T C G T A C G T A G C A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G C G T A T G C A G C A T G A C T G T C A G C T A G A C T G C A T C T G A C G T A G C A T C A G T C T G A G T C A T C G A

PB0129.1_Glis2_2/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TWTAWTAADAATTAAW
TCTTTANTAATANN----
 A C G T A C G T A C G T C G A T C G A T C G T A C G T A C A G T C G T A G T C A C G T A G T C A C G T A G A C T A C G T C G T A C G T A G C A T
A G C T A G T C C A G T G C A T C G A T C G T A C G A T G A C T G T C A C G T A G A C T T G C A G C A T C G A T A C G T A C G T A C G T A C G T

PB0066.1_Sox17_1/Jaspar

Match Rank:4
Score:0.66
Offset:3
Orientation:forward strand
Alignment:TWTAWTAADAATTAAW--
---ATAAACAATTAAACA
 A C G T C G A T C G A T C G T A C G T A C A G T C G T A G T C A C G T A G T C A C G T A G A C T A C G T C G T A C G T A G C A T A C G T A C G T
A C G T A C G T A C G T T G C A C G A T C T G A C G T A C G T A A G T C C G T A C G T A C G A T C G A T T C G A G C T A G C A T G A T C C G T A

HNF1A/MA0046.2/Jaspar

Match Rank:5
Score:0.66
Offset:2
Orientation:forward strand
Alignment:TWTAWTAADAATTAAW-
--AGTTAATGATTAACT
 A C G T C G A T C G A T C G T A C G T A C A G T C G T A G T C A C G T A G T C A C G T A G A C T A C G T C G T A C G T A G C A T A C G T
A C G T A C G T C T G A C T A G A G C T G C A T C T G A G T C A G C A T T A C G C G T A C A G T G A C T C G T A T C G A G T A C G C A T

PH0106.1_Msx1/Jaspar

Match Rank:6
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TWTAWTAADAATTAAW--
--TGCAACTAATTAATTC
 A C G T C G A T C G A T C G T A C G T A C A G T C G T A G T C A C G T A G T C A C G T A G A C T A C G T C G T A C G T A G C A T A C G T A C G T
A C G T A C G T A C G T T C A G G T A C G C T A C T G A G A T C G A C T G T C A C G T A C G A T C G A T C T G A C T G A A C G T G C A T G T A C

PH0006.1_Barhl2/Jaspar

Match Rank:7
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TWTAWTAADAATTAAW--
--AAAAACCAATTAAGAA
 A C G T C G A T C G A T C G T A C G T A C A G T C G T A G T C A C G T A G T C A C G T A G A C T A C G T C G T A C G T A G C A T A C G T A C G T
A C G T A C G T G T C A G T C A G T C A C T G A T C G A G A T C A G T C C T G A G C T A A C G T A C G T C G T A C T G A A T C G G C T A G C T A

PH0018.1_Dbx1/Jaspar

Match Rank:8
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:TWTAWTAADAATTAAW--
-TNATTATTAATTAATTA
 A C G T C G A T C G A T C G T A C G T A C A G T C G T A G T C A C G T A G T C A C G T A G A C T A C G T C G T A C G T A G C A T A C G T A C G T
A C G T G A C T C G T A G C T A A G C T G A C T C G T A C G A T G C A T C G T A C G T A G C A T C G A T C G T A C G T A G A C T C G A T C T G A

PH0120.1_Nkx6-3/Jaspar

Match Rank:9
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:TWTAWTAADAATTAAW----
---CNNANTAATTAATTNNC
 A C G T C G A T C G A T C G T A C G T A C A G T C G T A G T C A C G T A G T C A C G T A G A C T A C G T C G T A C G T A G C A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G A C T C G A T G C A T C G A A C T G G A C T T G C A C G T A G A C T G A C T C T G A G C T A C G A T C G A T C G A T A C G T G A T C

Hoxd8/MA0910.1/Jaspar

Match Rank:10
Score:0.64
Offset:4
Orientation:forward strand
Alignment:TWTAWTAADAATTAAW-----
----TAAATAATTAATGGCTA
 A C G T C G A T C G A T C G T A C G T A C A G T C G T A G T C A C G T A G T C A C G T A G A C T A C G T C G T A C G T A G C A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T G C T A C T G A C G A T G A C T G C T A C G T A C G A T G C A T C G T A G C T A G A C T C T A G C T A G G A T C C G A T G C T A