Information for 1-GGGACACCGA (Motif 3)

A T C G A C T G A T C G T G C A T A G C G T C A A G T C A G T C C A T G G C T A
Reverse Opposite:
C G A T G T A C T C A G A C T G C A G T A T C G A C G T A T G C A G T C A T G C
p-value:1e-11
log p-value:-2.581e+01
Information Content per bp:1.844
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif3.36%
Number of Background Sequences with motif312.2
Percentage of Background Sequences with motif0.63%
Average Position of motif in Targets43.0 +/- 27.8bp
Average Position of motif in Background50.6 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GGGACACCGA
CCAGGAACAG---
 A C G T A C G T A C G T A T C G A C T G A T C G T G C A T A G C G T C A A G T C A G T C C A T G G C T A
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T

PH0164.1_Six4/Jaspar

Match Rank:2
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GGGACACCGA---
ATAAATGACACCTATCA
 A C G T A C G T A C G T A C G T A T C G A C T G A T C G T G C A T A G C G T C A A G T C A G T C C A T G G C T A A C G T A C G T A C G T
G C T A C A G T C T G A G T C A G C T A A G C T C A T G G T C A A G T C G T C A G T A C A G T C A G C T G T C A A G C T A G T C T C G A

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GGGACACCGA--
RGGGCACTAACY
 A T C G A C T G A T C G T G C A T A G C G T C A A G T C A G T C C A T G G C T A A C G T A C G T
T C G A C A T G C A T G T A C G G T A C T C G A A G T C C A G T C T G A C G T A A G T C G A C T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:4
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------GGGACACCGA
CGCGCCGGGTCACGTA
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G A C T G A T C G T G C A T A G C G T C A A G T C A G T C C A T G G C T A
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

PB0117.1_Eomes_2/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GGGACACCGA---
NNGGCGACACCTCNNN
 A C G T A C G T A C G T A T C G A C T G A T C G T G C A T A G C G T C A A G T C A G T C C A T G G C T A A C G T A C G T A C G T
A T C G T C G A T C A G A T C G T G A C C T A G G C T A A G T C C T G A A T G C A G T C G A C T G A T C A G T C T A C G A G T C

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GGGACACCGA--
GGACCACCCACG
 A T C G A C T G A T C G T G C A T A G C G T C A A G T C A G T C C A T G G C T A A C G T A C G T
C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G

MZF1/MA0056.1/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GGGACACCGA
TGGGGA------
 A C G T A C G T A T C G A C T G A T C G T G C A T A G C G T C A A G T C A G T C C A T G G C T A
A G C T A C T G C T A G A C T G A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GGGACACCGA
GCCACACCCA
 A T C G A C T G A T C G T G C A T A G C G T C A A G T C A G T C C A T G G C T A
C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GGGACACCGA
AGGTCA----
 A T C G A C T G A T C G T G C A T A G C G T C A A G T C A G T C C A T G G C T A
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GGGACACCGA--
--GAGSCCGAGC
 A T C G A C T G A T C G T G C A T A G C G T C A A G T C A G T C C A T G G C T A A C G T A C G T
A C G T A C G T A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C