Information for 17-GGCACCCTGCAGC (Motif 27)

A C T G A C T G A G T C T C G A A G T C A G T C A G T C C A G T A C T G G T A C C T G A A T C G G T A C
Reverse Opposite:
C A T G A T G C A G C T A C T G A G T C G T C A A C T G A C T G T C A G A C G T C T A G A G T C G T A C
p-value:1e-6
log p-value:-1.549e+01
Information Content per bp:1.781
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.87%
Number of Background Sequences with motif167.7
Percentage of Background Sequences with motif0.34%
Average Position of motif in Targets44.1 +/- 29.1bp
Average Position of motif in Background49.3 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GGCACCCTGCAGC--
GGCCYCCTGCTGDGH
 A C T G A C T G A G T C T C G A A G T C A G T C A G T C C A G T A C T G G T A C C T G A A T C G G T A C A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

ZIC4/MA0751.1/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GGCACCCTGCAGC--
GACCCCCCGCTGTGC
 A C T G A C T G A G T C T C G A A G T C A G T C A G T C C A G T A C T G G T A C C T G A A T C G G T A C A C G T A C G T
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

ZIC3/MA0697.1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GGCACCCTGCAGC--
GACCCCCCGCTGCGC
 A C T G A C T G A G T C T C G A A G T C A G T C A G T C C A G T A C T G G T A C C T G A A T C G G T A C A C G T A C G T
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GGCACCCTGCAGC-
--CCCCCTGCTGTG
 A C T G A C T G A G T C T C G A A G T C A G T C A G T C C A G T A C T G G T A C C T G A A T C G G T A C A C G T
A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

ZIC1/MA0696.1/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GGCACCCTGCAGC-
GACCCCCCGCTGTG
 A C T G A C T G A G T C T C G A A G T C A G T C A G T C C A G T A C T G G T A C C T G A A T C G G T A C A C G T
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G

PB0091.1_Zbtb3_1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GGCACCCTGCAGC---
AATCGCACTGCATTCCG
 A C G T A C T G A C T G A G T C T C G A A G T C A G T C A G T C C A G T A C T G G T A C C T G A A T C G G T A C A C G T A C G T A C G T
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------GGCACCCTGCAGC-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C T C G A A G T C A G T C A G T C C A G T A C T G G T A C C T G A A T C G G T A C A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.55
Offset:5
Orientation:forward strand
Alignment:GGCACCCTGCAGC--
-----CCTGCTGAGH
 A C T G A C T G A G T C T C G A A G T C A G T C A G T C C A G T A C T G G T A C C T G A A T C G G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GGCACCCTGCAGC
-ACATCCTGNT--
 A C T G A C T G A G T C T C G A A G T C A G T C A G T C C A G T A C T G G T A C C T G A A T C G G T A C
A C G T C T G A A T G C C G T A A C G T A G T C A G T C A C G T A C T G A T C G G C A T A C G T A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:10
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----GGCACCCTGCAGC
TTGGGGGCGCCCCTAG--
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C T C G A A G T C A G T C A G T C C A G T A C T G G T A C C T G A A T C G G T A C
A C G T G A C T C T A G C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C A C G T T C G A T A C G A C G T A C G T