Information for 5-GCGASTTTCG (Motif 21)

A C T G A G T C A C T G C G T A T A G C A C G T A G C T A C G T A G T C A T C G
Reverse Opposite:
T A G C C T A G C G T A C T G A C G T A A T C G A C G T A G T C A C T G A G T C
p-value:1e-7
log p-value:-1.742e+01
Information Content per bp:1.832
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.27%
Number of Background Sequences with motif54.7
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets48.7 +/- 23.3bp
Average Position of motif in Background49.9 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0136.1_IRC900814_2/Jaspar

Match Rank:1
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----GCGASTTTCG--
TTTTACGACTTTCCAT
 A C G T A C G T A C G T A C G T A C T G A G T C A C T G C G T A T A G C A C G T A G C T A C G T A G T C A T C G A C G T A C G T
C G A T A G C T G C A T A G C T T C G A G A T C C T A G C T G A G T A C C A G T A G C T G A C T G A T C T G A C T C G A G A C T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:2
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GCGASTTTCG
GGGAATTTCC
 A C T G A G T C A C T G C G T A T A G C A C G T A G C T A C G T A G T C A T C G
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCGASTTTCG
GGGAATTTCC
 A C T G A G T C A C T G C G T A T A G C A C G T A G C T A C G T A G T C A T C G
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C

PB0146.1_Mafk_2/Jaspar

Match Rank:4
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GCGASTTTCG-
CCTTGCAATTTTTNN
 A C G T A C G T A C G T A C G T A C T G A G T C A C T G C G T A T A G C A C G T A G C T A C G T A G T C A T C G A C G T
A G T C T A G C C A G T A C G T C T A G G T A C C T G A G T C A C G A T C G A T G A C T G A C T A G C T C A G T A G T C

MF0003.1_REL_class/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GCGASTTTCG
GGGGATTTCC
 A C T G A G T C A C T G C G T A T A G C A C G T A G C T A C G T A G T C A T C G
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C

REL/MA0101.1/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCGASTTTCG
GGGGATTTCC
 A C T G A G T C A C T G C G T A T A G C A C G T A G C T A C G T A G T C A T C G
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:7
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GCGASTTTCG-----
---ACTTTCGTTTCT
 A C T G A G T C A C T G C G T A T A G C A C G T A G C T A C G T A G T C A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G C A A T G C A C G T A C G T A C G T A T G C C T A G A C G T A C G T A G C T G A T C A G C T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GCGASTTTCG-----
---ACTTTCACTTTC
 A C T G A G T C A C T G C G T A T A G C A C G T A G C T A C G T A G T C A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T G A C G C A T A G C T C A G T G A T C G C T A G A T C G A C T A C G T G C A T A G T C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GCGASTTTCG-
NGGGGATTTCCC
 A C G T A C T G A G T C A C T G C G T A T A G C A C G T A G C T A C G T A G T C A T C G A C G T
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

Nr2e1/MA0676.1/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GCGASTTTCG
TTGACTTTT-
 A C T G A G T C A C T G C G T A T A G C A C G T A G C T A C G T A G T C A T C G
C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T A C G T