Information for 10-GCCTGCTCTAGCCATT (Motif 15)

A C T G A G T C A G T C C G A T A C T G A G T C A C G T A G T C A C G T C G T A A T C G A G T C A G T C C G T A A C G T A C G T
Reverse Opposite:
C G T A G T C A A C G T A C T G A C T G A T G C G A C T T C G A A C T G C G T A A C T G A G T C C G T A A C T G A C T G G T A C
p-value:1e-8
log p-value:-1.975e+01
Information Content per bp:1.912
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.51%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets64.2 +/- 21.7bp
Average Position of motif in Background42.8 +/- 1.4bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.54
Offset:6
Orientation:forward strand
Alignment:GCCTGCTCTAGCCATT--
------ACTAGCCAATCA
 A C T G A G T C A G T C C G A T A C T G A G T C A C G T A G T C A C G T C G T A A T C G A G T C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.52
Offset:9
Orientation:forward strand
Alignment:GCCTGCTCTAGCCATT---
---------GGCCATTAAC
 A C T G A G T C A G T C C G A T A C T G A G T C A C G T A G T C A C G T C G T A A T C G A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GCCTGCTCTAGCCATT-
NAAACCGGTTNNAACCGGTT
 A C G T A C G T A C G T A C T G A G T C A G T C C G A T A C T G A G T C A C G T A G T C A C G T C G T A A T C G A G T C A G T C C G T A A C G T A C G T A C G T
T G A C T C G A C T G A C T G A A T G C G A T C C T A G T A C G G A C T G A C T G A T C T C G A C T G A C T G A A T G C G A T C C T A G A T C G G A C T G A C T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:4
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-GCCTGCTCTAGCCATT
TGCCTGCGYCMCCTT--
 A C G T A C T G A G T C A G T C C G A T A C T G A G T C A C G T A G T C A C G T C G T A A T C G A G T C A G T C C G T A A C G T A C G T
C A G T A C T G A G T C A G T C A C G T A C T G A T G C C T A G A G T C G A T C G T C A A G T C A G T C G C A T A C G T A C G T A C G T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:GCCTGCTCTAGCCATT
---GGCTCYAKCAYC-
 A C T G A G T C A G T C C G A T A C T G A G T C A C G T A G T C A C G T C G T A A T C G A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.48
Offset:-2
Orientation:reverse strand
Alignment:--GCCTGCTCTAGCCATT
CCCCCTGCTGTG------
 A C G T A C G T A C T G A G T C A G T C C G A T A C T G A G T C A C G T A G T C A C G T C G T A A T C G A G T C A G T C C G T A A C G T A C G T
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

NRF1/MA0506.1/Jaspar

Match Rank:7
Score:0.47
Offset:-2
Orientation:forward strand
Alignment:--GCCTGCTCTAGCCATT
GCGCCTGCGCA-------
 A C G T A C G T A C T G A G T C A G T C C G A T A C T G A G T C A C G T A G T C A C G T C G T A A T C G A G T C A G T C C G T A A C G T A C G T
T C A G G T A C T C A G A T G C T G A C A C G T A C T G A G T C A T C G G T A C T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

YY2/MA0748.1/Jaspar

Match Rank:8
Score:0.47
Offset:6
Orientation:forward strand
Alignment:GCCTGCTCTAGCCATT-
------GTCCGCCATTA
 A C T G A G T C A G T C C G A T A C T G A G T C A C G T A G T C A C G T C G T A A T C G A G T C A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.46
Offset:-4
Orientation:forward strand
Alignment:----GCCTGCTCTAGCCATT
SNGCACCTGCHS--------
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G A T A C T G A G T C A C G T A G T C A C G T C G T A A T C G A G T C A G T C C G T A A C G T A C G T
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:10
Score:0.46
Offset:4
Orientation:forward strand
Alignment:GCCTGCTCTAGCCATT
----CGTCTAGACA--
 A C T G A G T C A G T C C G A T A C T G A G T C A C G T A G T C A C G T C G T A A T C G A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T A C G T