Information for 3-GCTGATTTCAGGC (Motif 4)

A C T G A G T C A C G T A C T G C G T A A C G T A C G T A C G T G T A C C T G A A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C A G C T A C T G G T C A C G T A T C G A C G A T A G T C C G T A A C T G A G T C
p-value:1e-11
log p-value:-2.533e+01
Information Content per bp:1.936
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.4 +/- 23.4bp
Average Position of motif in Background80.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:1
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GCTGATTTCAGGC-
--TGATTTATGGCC
 A C T G A G T C A C G T A C T G C G T A A C G T A C G T A C G T G T A C C T G A A C T G A C T G A G T C A C G T
A C G T A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

PH0037.1_Hdx/Jaspar

Match Rank:2
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GCTGATTTCAGGC-
TNNNATGATTTCNNCNN
 A C G T A C G T A C G T A C T G A G T C A C G T A C T G C G T A A C G T A C G T A C G T G T A C C T G A A C T G A C T G A G T C A C G T
A C G T C A T G T A G C C T A G C T G A C G A T A T C G G T C A G C A T G C A T A C G T G A T C C A T G G T A C T G A C G A C T G C A T

Hoxc9/MA0485.1/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GCTGATTTCAGGC-
-NTGATTTATGGCC
 A C T G A G T C A C G T A C T G C G T A A C G T A C G T A C G T G T A C C T G A A C T G A C T G A G T C A C G T
A C G T T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GCTGATTTCAGGC
NRRTGACGTCAT--
 A C G T A C T G A G T C A C G T A C T G C G T A A C G T A C G T A C G T G T A C C T G A A C T G A C T G A G T C
A T G C T C A G T C G A G C A T A C T G C G T A A G T C T C A G G A C T T G A C C G T A A G C T A C G T A C G T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GCTGATTTCAGGC
--TGGTTTCAGT-
 A C T G A G T C A C G T A C T G C G T A A C G T A C G T A C G T G T A C C T G A A C T G A C T G A G T C
A C G T A C G T G A C T C T A G T A C G C G A T G C A T A C G T T A G C T C G A A T C G C G A T A C G T

c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GCTGATTTCAGGC
NGATGACGTCAT--
 A C G T A C T G A G T C A C G T A C T G C G T A A C G T A C G T A C G T G T A C C T G A A C T G A C T G A G T C
C T A G T C A G T C G A C G A T C A T G C T G A A G T C T C A G G A C T T G A C C G T A A G C T A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:7
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GCTGATTTCAGGC
--TGATTTATGGC
 A C T G A G T C A C G T A C T G C G T A A C G T A C G T A C G T G T A C C T G A A C T G A C T G A G T C
A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCTGATTTCAGGC
NGRTGACGTCAY--
 A C G T A C T G A G T C A C G T A C T G C G T A A C G T A C G T A C G T G T A C C T G A A C T G A C T G A G T C
T A G C C T A G T C G A G A C T A C T G C T G A A G T C T C A G G C A T T G A C C T G A A G C T A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:9
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----GCTGATTTCAGGC
AATTTGCTGAC-------
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C T G C G T A A C G T A C G T A C G T G T A C C T G A A C T G A C T G A G T C
C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:10
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GCTGATTTCAGGC-
--TGATTTATGGCC
 A C T G A G T C A C G T A C T G C G T A A C G T A C G T A C G T G T A C C T G A A C T G A C T G A G T C A C G T
A C G T A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C