Information for 15-CGCAGCAGCCTGGCGC (Motif 31)

A G T C A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C A G T C A C G T A C T G A C T G A G T C A C T G A G T C
Reverse Opposite:
A C T G A G T C A C T G A G T C A G T C C G T A A C T G A C T G A G T C A C G T A C T G A G T C A C G T A C T G A G T C A C T G
p-value:1e-6
log p-value:-1.453e+01
Information Content per bp:1.530
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.97%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets51.0 +/- 25.3bp
Average Position of motif in Background50.7 +/- 5.8bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NHLH1/MA0048.2/Jaspar

Match Rank:1
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CGCAGCAGCCTGGCGC
CGCAGCTGCG------
 A G T C A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C A G T C A C G T A C T G A C T G A G T C A C T G A G T C
T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:2
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:CGCAGCAGCCTGGCGC-
------TGCCTGAGGCN
 A G T C A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C A G T C A C G T A C T G A C T G A G T C A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A G T

TFAP2A/MA0003.3/Jaspar

Match Rank:3
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:CGCAGCAGCCTGGCGC-
------NGCCTGAGGCN
 A G T C A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C A G T C A C G T A C T G A C T G A G T C A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A T G

PB0147.1_Max_2/Jaspar

Match Rank:4
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CGCAGCAGCCTGGCGC
--NNGTCGCGTGNCAC
 A G T C A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C A G T C A C G T A C T G A C T G A G T C A C T G A G T C
A C G T A C G T G T A C G C T A A C T G A G C T T G A C C T A G A G T C T C A G G A C T A C T G C T A G G T A C T C G A T G A C

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---CGCAGCAGCCTGGCGC
CCACACAGCAGGAGA----
 A C G T A C G T A C G T A G T C A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C A G T C A C G T A C T G A C T G A G T C A C T G A G T C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T

PB0113.1_E2F3_2/Jaspar

Match Rank:6
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:CGCAGCAGCCTGGCGC------
-----NNNNTTGGCGCCGANNN
 A G T C A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C A G T C A C G T A C T G A C T G A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G T A G C A C G T G A C T A C G T G C A T C T A G A T C G G T A C A C T G A T G C A G T C C T A G G C T A C T A G A T G C C A G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CGCAGCAGCCTGGCGC
DCHCAGCAGGRGGCC--
 A C G T A G T C A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C A G T C A C G T A C T G A C T G A G T C A C T G A G T C
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:8
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:CGCAGCAGCCTGGCGC-
------NGCCTNAGGCN
 A G T C A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C A G T C A C G T A C T G A C T G A G T C A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A T C G A T G C A G T C A G C T A T C G T C G A T C A G A T C G A T G C C A G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CGCAGCAGCCTGGCGC
CACAGCAGGGGG----
 A G T C A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C A G T C A C G T A C T G A C T G A G T C A C T G A G T C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T

PB0112.1_E2F2_2/Jaspar

Match Rank:10
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:CGCAGCAGCCTGGCGC------
-----NNNNTTGGCGCCGANNN
 A G T C A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C A G T C A C G T A C T G A C T G A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C T G A C A G C T A G C T C A G T G A C T C T A G A T C G G T A C A C T G T A G C G A T C C T A G G C T A T C G A A T C G C A T G