Information for 2-GTTGCGTCTC (Motif 10)

A C T G A C G T C A G T A C T G A G T C T C A G A C G T A T G C A C G T A T G C
Reverse Opposite:
A T C G C G T A T A C G C G T A A G T C A C T G A G T C G T C A G T C A T G A C
p-value:1e-7
log p-value:-1.658e+01
Information Content per bp:1.769
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.75%
Number of Background Sequences with motif143.1
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets58.6 +/- 32.8bp
Average Position of motif in Background50.5 +/- 25.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GTTGCGTCTC-
-VBSYGTCTGG
 A C T G A C G T C A G T A C T G A G T C T C A G A C G T A T G C A C G T A T G C A C G T
A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

PB0151.1_Myf6_2/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GTTGCGTCTC-----
GGNGCGNCTGTTNNN
 A C T G A C G T C A G T A C T G A G T C T C A G A C G T A T G C A C G T A T G C A C G T A C G T A C G T A C G T A C G T
C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GTTGCGTCTC-
-TTGCGTGCVA
 A C T G A C G T C A G T A C T G A G T C T C A G A C G T A T G C A C G T A T G C A C G T
A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GTTGCGTCTC-
---CTGTCTGG
 A C T G A C G T C A G T A C T G A G T C T C A G A C G T A T G C A C G T A T G C A C G T
A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GTTGCGTCTC
--TGCGTG--
 A C T G A C G T C A G T A C T G A G T C T C A G A C G T A T G C A C G T A T G C
A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GTTGCGTCTC-------
NTNNCGTATCCAAGTNN
 A C T G A C G T C A G T A C T G A G T C T C A G A C G T A T G C A C G T A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C G A T G C A T A T G C A T G C C T A G G A C T G T C A C G A T A G T C A G T C C T G A G T C A T A C G A G C T T G C A T A C G

PB0143.1_Klf7_2/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GTTGCGTCTC---
NNNTNGGGCGTATNNTN
 A C G T A C G T A C G T A C G T A C T G A C G T C A G T A C T G A G T C T C A G A C G T A T G C A C G T A T G C A C G T A C G T A C G T
G T C A C G T A A C T G G C A T C A G T C T A G A C T G A C T G G A T C C T A G A C G T G C T A G C A T T C A G G A T C A G C T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GTTGCGTCTC------
NNTNNTGTCTGGNNTNG
 A C G T A C T G A C G T C A G T A C T G A G T C T C A G A C G T A T G C A C G T A T G C A C G T A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

PB0147.1_Max_2/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GTTGCGTCTC--
NNGTCGCGTGNCAC
 A C G T A C G T A C T G A C G T C A G T A C T G A G T C T C A G A C G T A T G C A C G T A T G C A C G T A C G T
G T A C G C T A A C T G A G C T T G A C C T A G A G T C T C A G G A C T A C T G C T A G G T A C T C G A T G A C

CREB1/MA0018.2/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GTTGCGTCTC
-TGACGTCA-
 A C T G A C G T C A G T A C T G A G T C T C A G A C G T A T G C A C G T A T G C
A C G T G C A T A C T G C T G A A G T C A T C G A C G T A T G C T C G A A C G T