Information for 4-SMGCSAYGGAGMCMGG (Motif 8)

A T G C G T C A A C T G A G T C A T G C T C G A A G T C C T A G A C T G G T C A A C T G T G A C A T G C G T C A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T A T C G A C T G A G T C A C G T A G T C A G T C C T A G A C G T T A C G A C T G A G T C A C G T A T C G
p-value:1e-9
log p-value:-2.163e+01
Information Content per bp:1.836
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.1 +/- 28.9bp
Average Position of motif in Background71.5 +/- 5.8bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:SMGCSAYGGAGMCMGG
------CGGAGC----
 A T G C G T C A A C T G A G T C A T G C T C G A A G T C C T A G A C T G G T C A A C T G T G A C A T G C G T C A A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.52
Offset:1
Orientation:forward strand
Alignment:SMGCSAYGGAGMCMGG
-GRTGMTRGAGCC---
 A T G C G T C A A C T G A G T C A T G C T C G A A G T C C T A G A C T G G T C A A C T G T G A C A T G C G T C A A C T G A C T G
A C G T A T C G T C G A G A C T A T C G T G A C A C G T C T A G A C T G C G T A A C T G A G T C G T A C A C G T A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:SMGCSAYGGAGMCMGG
TTGCCATGGCAACN--
 A T G C G T C A A C T G A G T C A T G C T C G A A G T C C T A G A C T G G T C A A C T G T G A C A T G C G T C A A C T G A C T G
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T A C G T

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:4
Score:0.51
Offset:1
Orientation:forward strand
Alignment:SMGCSAYGGAGMCMGG--
-CTACTTGGATACGGAAT
 A T G C G T C A A C T G A G T C A T G C T C G A A G T C C T A G A C T G G T C A A C T G T G A C A T G C G T C A A C T G A C T G A C G T A C G T
A C G T A T G C A C G T T C G A A T G C C A G T G A C T T C A G A C T G C G T A A C G T C G T A G A T C T A C G T A C G C G T A C G T A G C A T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:5
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-SMGCSAYGGAGMCMGG
GTTGCCATGGCAACCG-
 A C G T A T G C G T C A A C T G A G T C A T G C T C G A A G T C C T A G A C T G G T C A A C T G T G A C A T G C G T C A A C T G A C T G
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:6
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-SMGCSAYGGAGMCMGG
GTTGCCATGGNAAC---
 A C G T A T G C G T C A A C T G A G T C A T G C T C G A A G T C C T A G A C T G G T C A A C T G T G A C A T G C G T C A A C T G A C T G
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C A C G T A C G T A C G T

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.49
Offset:-4
Orientation:forward strand
Alignment:----SMGCSAYGGAGMCMGG
GAGCCTGGTACTGWGCCTGR
 A C G T A C G T A C G T A C G T A T G C G T C A A C T G A G T C A T G C T C G A A G T C C T A G A C T G G T C A A C T G T G A C A T G C G T C A A C T G A C T G
T A C G C T G A C A T G G A T C G T A C G C A T T C A G T A C G A G C T G T C A G A T C G C A T T A C G C G T A C T A G G A T C G A T C C G A T A C T G T C A G

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.48
Offset:8
Orientation:forward strand
Alignment:SMGCSAYGGAGMCMGG--
--------GAGSCCGAGC
 A T G C G T C A A C T G A G T C A T G C T C G A A G T C C T A G A C T G G T C A A C T G T G A C A T G C G T C A A C T G A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:9
Score:0.47
Offset:-1
Orientation:forward strand
Alignment:-SMGCSAYGGAGMCMGG
GTTGCCATGGCAACM--
 A C G T A T G C G T C A A C T G A G T C A T G C T C G A A G T C C T A G A C T G G T C A A C T G T G A C A T G C G T C A A C T G A C T G
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C A C G T A C G T

PB0203.1_Zfp691_2/Jaspar

Match Rank:10
Score:0.47
Offset:1
Orientation:reverse strand
Alignment:SMGCSAYGGAGMCMGG--
-NTNNNAGGAGTCTCNTN
 A T G C G T C A A C T G A G T C A T G C T C G A A G T C C T A G A C T G G T C A A C T G T G A C A T G C G T C A A C T G A C T G A C G T A C G T
A C G T A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A