Information for 3-CAGCCACMTAGGCAGG (Motif 12)

A T G C G T C A A C T G A G T C T G A C C G T A A G T C T G C A C A G T G T C A A T C G T A C G A G T C G T C A C T A G A C T G
Reverse Opposite:
A G T C A G T C C A G T A C T G A T G C A T G C A C G T G T C A A C G T A C T G G C A T A C T G A C T G A G T C A C G T A T C G
p-value:1e-9
log p-value:-2.080e+01
Information Content per bp:1.768
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif10.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets49.4 +/- 20.3bp
Average Position of motif in Background51.1 +/- 22.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CAGCCACMTAGGCAGG
CAGCC-----------
 A T G C G T C A A C T G A G T C T G A C C G T A A G T C T G C A C A G T G T C A A T C G T A C G A G T C G T C A C T A G A C T G
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCACMTAGGCAGG---
YCAGGCWCAGTACCAGGCTC
 A C G T A T G C G T C A A C T G A G T C T G A C C G T A A G T C T G C A C A G T G T C A A T C G T A C G A G T C G T C A C T A G A C T G A C G T A C G T A C G T
A G T C T G A C G C T A C T A G C T A G G A T C G C A T A T G C C G T A C T A G C A G T T C G A A T G C A G T C C G T A C A T G C T A G G T A C G A C T A T G C

RUNX1/MA0002.2/Jaspar

Match Rank:3
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CAGCCACMTAGGCAGG
AAACCACAGAN-----
 A T G C G T C A A C T G A G T C T G A C C G T A A G T C T G C A C A G T G T C A A T C G T A C G A G T C G T C A C T A G A C T G
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T A C G T A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:4
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CAGCCACMTAGGCAGG
AAACCACANN------
 A T G C G T C A A C T G A G T C T G A C C G T A A G T C T G C A C A G T G T C A A T C G T A C G A G T C G T C A C T A G A C T G
G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCACMTAGGCAGG
BCAGACWA---------
 A C G T A T G C G T C A A C T G A G T C T G A C C G T A A G T C T G C A C A G T G T C A A T C G T A C G A G T C G T C A C T A G A C T G
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:6
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-CAGCCACMTAGGCAGG
NWAACCACADNN-----
 A C G T A T G C G T C A A C T G A G T C T G A C C G T A A G T C T G C A C A G T G T C A A T C G T A C G A G T C G T C A C T A G A C T G
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T A C G T

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:7
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCACMTAGGCAGG---
TCAGCACCATGGACAGCTCC
 A C G T A T G C G T C A A C T G A G T C T G A C C G T A A G T C T G C A C A G T G T C A A T C G T A C G A G T C G T C A C T A G A C T G A C G T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--CAGCCACMTAGGCAGG
CACAGN------------
 A C G T A C G T A T G C G T C A A C T G A G T C T G A C C G T A A G T C T G C A C A G T G T C A A T C G T A C G A G T C G T C A C T A G A C T G
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

REST/MA0138.2/Jaspar

Match Rank:9
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--CAGCCACMTAGGCAGG---
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A T G C G T C A A C T G A G T C T G A C C G T A A G T C T G C A C A G T G T C A A T C G T A C G A G T C G T C A C T A G A C T G A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.48
Offset:8
Orientation:forward strand
Alignment:CAGCCACMTAGGCAGG---
--------AAGGCAAGTGT
 A T G C G T C A A C T G A G T C T G A C C G T A A G T C T G C A C A G T G T C A A T C G T A C G A G T C G T C A C T A G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T