Information for 2-GTGGCAGCCCCGC (Motif 4)

A T C G A C G T A T C G A C T G A G T C C G T A A C T G A G T C A G T C A G T C G T A C A C T G A G T C
Reverse Opposite:
A C T G A G T C A C T G A C T G C T A G A C T G A G T C C G A T A C T G A G T C A T G C C G T A A T G C
p-value:1e-11
log p-value:-2.640e+01
Information Content per bp:1.903
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif8.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets43.8 +/- 24.9bp
Average Position of motif in Background58.5 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sp1(Zf)/Promoter/Homer

Match Rank:1
Score:0.61
Offset:5
Orientation:forward strand
Alignment:GTGGCAGCCCCGC----
-----GGCCCCGCCCCC
 A T C G A C G T A T C G A C T G A G T C C G T A A C T G A G T C A G T C A G T C G T A C A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G C T A G A T G C G A T C G T A C A G T C C T A G A G T C A G T C A G T C G T A C A G T C

POL003.1_GC-box/Jaspar

Match Rank:2
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GTGGCAGCCCCGC-----
----NAGCCCCGCCCCCN
 A T C G A C G T A T C G A C T G A G T C C G T A A C T G A G T C A G T C A G T C G T A C A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C T C G A T C A G G T A C G A T C T G A C G A T C C A T G A G T C A G T C A G T C G T A C G A T C G C A T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:3
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GTGGCAGCCCCGC
VBTGWCAGCB----
 A C G T A T C G A C G T A T C G A C T G A G T C C G T A A C T G A G T C A G T C A G T C G T A C A C T G A G T C
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:4
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GTGGCAGCCCCGC-------
---TACGCCCCGCCACTCTG
 A T C G A C G T A T C G A C T G A G T C C G T A A C T G A G T C A G T C A G T C G T A C A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

SP2/MA0516.1/Jaspar

Match Rank:5
Score:0.56
Offset:6
Orientation:forward strand
Alignment:GTGGCAGCCCCGC--------
------GCCCCGCCCCCTCCC
 A T C G A C G T A T C G A C T G A G T C C G T A A C T G A G T C A G T C A G T C G T A C A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T C G A G T C G A T C A T G C A G T C C A T G A G T C A G T C A G T C G A T C G A T C A G C T A T G C A T G C A T G C

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:6
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:GTGGCAGCCCCGC-----
------GCTCCGCCCMCY
 A T C G A C G T A T C G A C T G A G T C C G T A A C T G A G T C A G T C A G T C G T A C A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G T C G A C T G T A C A T G C C T A G A G T C A G T C A G T C G T C A A G T C G A C T

SP1/MA0079.3/Jaspar

Match Rank:7
Score:0.55
Offset:6
Orientation:forward strand
Alignment:GTGGCAGCCCCGC----
------GCCCCGCCCCC
 A T C G A C G T A T C G A C T G A G T C C G T A A C T G A G T C A G T C A G T C G T A C A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C G A T C A G T C A G T C C A T G A G T C A G T C A G T C G A T C A G T C

PB0151.1_Myf6_2/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GTGGCAGCCCCGC-
AGCAACAGCCGCACC
 A C G T A T C G A C G T A T C G A C T G A G T C C G T A A C T G A G T C A G T C A G T C G T A C A C T G A G T C A C G T
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C

POL013.1_MED-1/Jaspar

Match Rank:9
Score:0.54
Offset:6
Orientation:forward strand
Alignment:GTGGCAGCCCCGC
------GCTCCG-
 A T C G A C G T A T C G A C T G A G T C C G T A A C T G A G T C A G T C A G T C G T A C A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GTGGCAGCCCCGC
AGGTGHCAGACA---
 A C G T A C G T A T C G A C G T A T C G A C T G A G T C C G T A A C T G A G T C A G T C A G T C G T A C A C T G A G T C
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T