Information for 16-ACACGGCAGGAGA (Motif 18)

C G T A A G T C C T G A A T G C C T A G A C T G G T A C T C G A A T C G A C T G G C T A A C T G C T G A
Reverse Opposite:
A G C T A G T C C G A T A G T C A T G C A C G T A C T G A G T C A G T C A T C G A G C T A C T G A C G T
p-value:1e-6
log p-value:-1.389e+01
Information Content per bp:1.821
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif28.3
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets65.0 +/- 13.8bp
Average Position of motif in Background56.6 +/- 25.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0205.1_Zic1_2/Jaspar

Match Rank:1
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--ACACGGCAGGAGA
CCACACAGCAGGAGA
 A C G T A C G T C G T A A G T C C T G A A T G C C T A G A C T G G T A C T C G A A T C G A C T G G C T A A C T G C T G A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--ACACGGCAGGAGA
CCACACAGCAGGAGA
 A C G T A C G T C G T A A G T C C T G A A T G C C T A G A C T G G T A C T C G A A T C G A C T G G C T A A C T G C T G A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--ACACGGCAGGAGA
GAGCACAGCAGGACA
 A C G T A C G T C G T A A G T C C T G A A T G C C T A G A C T G G T A C T C G A A T C G A C T G G C T A A C T G C T G A
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:ACACGGCAGGAGA--
DCHCAGCAGGRGGCC
 C G T A A G T C C T G A A T G C C T A G A C T G G T A C T C G A A T C G A C T G G C T A A C T G C T G A A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.68
Offset:1
Orientation:forward strand
Alignment:ACACGGCAGGAGA
-CACAGCAGGGGG
 C G T A A G T C C T G A A T G C C T A G A C T G G T A C T C G A A T C G A C T G G C T A A C T G C T G A
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

ZIC3/MA0697.1/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:ACACGGCAGGAGA--
NCGCAGCGGGGGGTC
 C G T A A G T C C T G A A T G C C T A G A C T G G T A C T C G A A T C G A C T G G C T A A C T G C T G A A C G T A C G T
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

ZIC1/MA0696.1/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:ACACGGCAGGAGA--
-CACAGCGGGGGGTC
 C G T A A G T C C T G A A T G C C T A G A C T G G T A C T C G A A T C G A C T G G C T A A C T G C T G A A C G T A C G T
A C G T T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:ACACGGCAGGAGA
DCTCAGCAGG---
 C G T A A G T C C T G A A T G C C T A G A C T G G T A C T C G A A T C G A C T G G C T A A C T G C T G A
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:ACACGGCAGGAGA--
NCNCAGCGGGGGGTC
 C G T A A G T C C T G A A T G C C T A G A C T G G T A C T C G A A T C G A C T G G C T A A C T G C T G A A C G T A C G T
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C

E2F4/MA0470.1/Jaspar

Match Rank:10
Score:0.57
Offset:3
Orientation:forward strand
Alignment:ACACGGCAGGAGA-
---GGGCGGGAAGG
 C G T A A G T C C T G A A T G C C T A G A C T G G T A C T C G A A T C G A C T G G C T A A C T G C T G A A C G T
A C G T A C G T A C G T A C T G T A C G A T C G A G T C A C T G T A C G T A C G C T G A C T G A T C A G T C A G