Information for 2-TGCAGCAGCTCCGCCG (Motif 8)

A C G T A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C A C G T A T G C A G T C A C T G A G T C A G T C A C T G
Reverse Opposite:
A G T C A C T G A C T G A G T C C T A G A T C G C G T A A C T G A G T C C G A T A C T G A G T C C G A T A C T G A G T C C G T A
p-value:1e-8
log p-value:-2.007e+01
Information Content per bp:1.944
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.8 +/- 21.6bp
Average Position of motif in Background74.6 +/- 7.3bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NHLH1/MA0048.2/Jaspar

Match Rank:1
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TGCAGCAGCTCCGCCG
---CGCAGCTGCG---
 A C G T A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C A C G T A T G C A G T C A C T G A G T C A G T C A C T G
A C G T A C G T A C G T T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TGCAGCAGCTCCGCCG
AGCAGCTGCTNN----
 A C G T A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C A C G T A T G C A G T C A C T G A G T C A G T C A C T G
C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C A C G T A C G T A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TGCAGCAGCTCCGCCG-
CTCAGCAGCTGCTACTG
 A C G T A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C A C G T A T G C A G T C A C T G A G T C A G T C A C T G A C G T
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G

Ascl2/MA0816.1/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGCAGCAGCTCCGCCG
AGCAGCTGCT------
 A C G T A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C A C G T A T G C A G T C A C T G A G T C A G T C A C T G
C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TGCAGCAGCTCCGCCG
-NCAGCTGCTG-----
 A C G T A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C A C G T A T G C A G T C A C T G A G T C A G T C A C T G
A C G T T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G A C G T A C G T A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:6
Score:0.58
Offset:7
Orientation:forward strand
Alignment:TGCAGCAGCTCCGCCG
-------GCTCCG---
 A C G T A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C A C G T A T G C A G T C A C T G A G T C A G T C A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TGCAGCAGCTCCGCCG
--CAGCTGNT------
 A C G T A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C A C G T A T G C A G T C A C T G A G T C A G T C A C T G
A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:8
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:TGCAGCAGCTCCGCCG---
-------GCTCCGCCCMCY
 A C G T A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C A C G T A T G C A G T C A C T G A G T C A G T C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G T C G A C T G T A C A T G C C T A G A G T C A G T C A G T C G T C A A G T C G A C T

Myod1/MA0499.1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TGCAGCAGCTCCGCCG
TGCAGCTGTCCCT---
 A C G T A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C A C G T A T G C A G T C A C T G A G T C A G T C A C T G
G C A T T A C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C T A G C A G T C A G C T A C G T A C G T A C G T

Myog/MA0500.1/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TGCAGCAGCTCCGCCG
NNGCAGCTGTC------
 A C G T A C G T A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C A C G T A T G C A G T C A C T G A G T C A G T C A C T G
A T G C G A C T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C A C G T A C G T A C G T A C G T A C G T A C G T