Information for 2-GAATTTGCAG (Motif 6)

A C T G T G C A C G T A A C G T A G C T A C G T A T C G A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G T A G C C G T A C T G A C G T A A C G T A C G T G T A C
p-value:1e-9
log p-value:-2.169e+01
Information Content per bp:1.873
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif2.48%
Number of Background Sequences with motif53.2
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets36.4 +/- 25.4bp
Average Position of motif in Background40.1 +/- 26.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU2F2/MA0507.1/Jaspar

Match Rank:1
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GAATTTGCAG--
TTCATTTGCATAT
 A C G T A C T G T G C A C G T A A C G T A G C T A C G T A T C G A G T C C G T A A C T G A C G T A C G T
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.71
Offset:2
Orientation:forward strand
Alignment:GAATTTGCAG--
--ATTTGCATAA
 A C T G T G C A C G T A A C G T A G C T A C G T A T C G A G T C C G T A A C T G A C G T A C G T
A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A

Pou2f3/MA0627.1/Jaspar

Match Rank:3
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--GAATTTGCAG----
TNTAATTTGCATACNA
 A C G T A C G T A C T G T G C A C G T A A C G T A G C T A C G T A T C G A G T C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:4
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--GAATTTGCAG----
TNTAATTTGCATACNA
 A C G T A C G T A C T G T G C A C G T A A C G T A G C T A C G T A T C G A G T C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:GAATTTGCAG--
--ATTTGCATAT
 A C T G T G C A C G T A A C G T A G C T A C G T A T C G A G T C C G T A A C T G A C G T A C G T
A C G T A C G T G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T

PH0144.1_Pou2f2/Jaspar

Match Rank:6
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--GAATTTGCAG----
TNTAATTTGCATANNN
 A C G T A C G T A C T G T G C A C G T A A C G T A G C T A C G T A T C G A G T C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:7
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--GAATTTGCAG
GGGAATTTCC--
 A C G T A C G T A C T G T G C A C G T A A C G T A G C T A C G T A T C G A G T C C G T A A C T G
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GAATTTGCAG-
BTVATTWGCATA
 A C G T A C T G T G C A C G T A A C G T A G C T A C G T A T C G A G T C C G T A A C T G A C G T
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A

POU2F1/MA0785.1/Jaspar

Match Rank:9
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GAATTTGCAG---
-AATTTGCATANT
 A C T G T G C A C G T A A C G T A G C T A C G T A T C G A G T C C G T A A C T G A C G T A C G T A C G T
A C G T G T C A G C T A G C A T G A C T G C A T T C A G G T A C T C G A G C A T C T G A G C A T C G A T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GAATTTGCAG-
CTCATTTGCATW
 A C G T A C T G T G C A C G T A A C G T A G C T A C G T A T C G A G T C C G T A A C T G A C G T
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A