Information for 3-TTAGAGTTAATTA (Motif 3)

A C G T A C G T C G T A C A T G C G T A A T C G C A G T A C G T C G T A C G T A C G A T A C G T C G T A
Reverse Opposite:
A C G T C G T A C G T A C G A T C G A T C G T A G C T A A T G C C G A T G T A C A C G T G T C A C G T A
p-value:1e-11
log p-value:-2.551e+01
Information Content per bp:1.793
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.28%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets63.6 +/- 11.8bp
Average Position of motif in Background52.4 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0031.1_Hoxa3_1/Jaspar

Match Rank:1
Score:0.69
Offset:1
Orientation:forward strand
Alignment:TTAGAGTTAATTA--
-TGGAGGTAATTAAC
 A C G T A C G T C G T A C A T G C G T A A T C G C A G T A C G T C G T A C G T A C G A T A C G T C G T A A C G T A C G T
A C G T C A G T A C T G A T C G G C T A C T A G A T C G G A C T G T C A C G T A A C G T A C G T C T G A T C G A A G T C

PH0050.1_Hoxa3/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TTAGAGTTAATTA--
-TTGAGGTAATTAGT
 A C G T A C G T C G T A C A T G C G T A A T C G C A G T A C G T C G T A C G T A C G A T A C G T C G T A A C G T A C G T
A C G T C A G T A G C T T A C G G T C A T C A G A T C G A G C T G T C A G T C A A C G T A C G T C T G A T C A G A G C T

PH0069.1_Hoxc4/Jaspar

Match Rank:3
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TTAGAGTTAATTA-----
-NNTNNTTAATTAATNCG
 A C G T A C G T C G T A C A T G C G T A A T C G C A G T A C G T C G T A C G T A C G A T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C A G T C G T A A C G T C G A T T C A G G C A T G A C T G T C A C G T A C G A T A C G T C T G A C G T A G A C T C A G T A G T C A C T G

mix-a/MA0621.1/Jaspar

Match Rank:4
Score:0.67
Offset:4
Orientation:forward strand
Alignment:TTAGAGTTAATTA--
----AATTAATTAGT
 A C G T A C G T C G T A C A T G C G T A A T C G C A G T A C G T C G T A C G T A C G A T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C T G A G A C T A C G T C G T A C G T A A C G T A C G T C G T A C T A G A C G T

PH0072.1_Hoxc8/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TTAGAGTTAATTA----
-TTGGGGTAATTAACGT
 A C G T A C G T C G T A C A T G C G T A A T C G C A G T A C G T C G T A C G T A C G A T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C A T G C T A G C T A G C A T G G A C T G T C A G C T A C A G T C A G T C T G A G T C A A G T C C A T G A C G T

PH0074.1_Hoxd1/Jaspar

Match Rank:6
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TTAGAGTTAATTA-----
-NNNAGCTAATTAGCTTA
 A C G T A C G T C G T A C A T G C G T A A T C G C A G T A C G T C G T A C G T A C G A T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C G A T G T C A G T A C T G C A T C A G A G T C G A C T T G C A C G T A C G A T A C G T C T G A T C A G A G C T C G A T A G C T G C T A

PH0061.1_Hoxb6/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TTAGAGTTAATTA----
-TATTGGTAATTACCTT
 A C G T A C G T C G T A C A T G C G T A A T C G C A G T A C G T C G T A C G T A C G A T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T G C A T G C T A C A G T C A G T A T C G A C T G A G C T G T C A C G T A C G A T C A G T C T G A G T A C T A G C C A G T A G C T

PH0176.1_Vsx1/Jaspar

Match Rank:8
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TTAGAGTTAATTA------
--CGAGTTAATTAATAATT
 A C G T A C G T C G T A C A T G C G T A A T C G C A G T A C G T C G T A C G T A C G A T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T A C T A C G G T C A C T A G G A C T G A C T G T C A C G T A G A C T A C G T C T G A C T G A G A C T C T G A T G C A G C A T A G C T

PH0020.1_Dlx1/Jaspar

Match Rank:9
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TTAGAGTTAATTA--
-CTGAGGTAATTAAT
 A C G T A C G T C G T A C A T G C G T A A T C G C A G T A C G T C G T A C G T A C G A T A C G T C G T A A C G T A C G T
A C G T A G T C A G C T C T A G T G C A C T A G C T A G G A C T T C G A C G T A C G A T A C G T C T G A C G T A A G C T

Hoxd3/MA0912.1/Jaspar

Match Rank:10
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TTAGAGTTAATTA----
-TTGAGTTAATTAACCT
 A C G T A C G T C G T A C A T G C G T A A T C G C A G T A C G T C G T A C G T A C G A T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T G A C T C G A T C A T G C T G A C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G A C G A T C A T G C A G C T