Information for 2-CTTAGCTCCTGAA (Motif 2)

A G T C A G C T A C G T G T C A A C T G A G T C C G A T G T A C A G T C A C G T A C T G C G T A C G T A
Reverse Opposite:
A C G T G A C T A G T C C G T A C T A G A C T G C G T A A C T G A G T C A C G T C G T A C T G A A C T G
p-value:1e-12
log p-value:-2.897e+01
Information Content per bp:1.842
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.28%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets62.8 +/- 18.0bp
Average Position of motif in Background23.7 +/- 4.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0051.1_Osr2_1/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CTTAGCTCCTGAA---
CNNNGCTACTGTANNN
 A G T C A G C T A C G T G T C A A C T G A G T C C G A T G T A C A G T C A C G T A C T G C G T A C G T A A C G T A C G T A C G T
G A T C C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C A T G A C G T C G T A A G T C C G T A C G A T

PB0050.1_Osr1_1/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTTAGCTCCTGAA---
TNNTGCTACTGTNNNN
 A G T C A G C T A C G T G T C A A C T G A G T C C G A T G T A C A G T C A C G T A C T G C G T A C G T A A C G T A C G T A C G T
G A C T C G A T A C G T C G A T T C A G A G T C A G C T G C T A A G T C A G C T C T A G A C G T C G T A G C T A C G T A C G A T

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CTTAGCTCCTGAA---
NNTNCGCACCTGTNGAN
 A C G T A G T C A G C T A C G T G T C A A C T G A G T C C G A T G T A C A G T C A C G T A C T G C G T A C G T A A C G T A C G T A C G T
G C A T C A G T G C A T A G C T G A T C T C A G G T A C C T G A A T G C T A G C A C G T A C T G A C G T C A T G C A T G G T C A A G C T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTTAGCTCCTGAA
ATTAACACCT---
 A G T C A G C T A C G T G T C A A C T G A G T C C G A T G T A C A G T C A C G T A C T G C G T A C G T A
G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T A C G T A C G T A C G T

TCF4/MA0830.1/Jaspar

Match Rank:5
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CTTAGCTCCTGAA
---CGCACCTGCT
 A G T C A G C T A C G T G T C A A C T G A G T C C G A T G T A C A G T C A C G T A C T G C G T A C G T A
A C G T A C G T A C G T G A T C T C A G G A T C C G T A A T G C T A G C C G A T C T A G A T G C C G A T

PB0054.1_Rfx3_1/Jaspar

Match Rank:6
Score:0.58
Offset:-7
Orientation:forward strand
Alignment:-------CTTAGCTCCTGAA---
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G C T A C G T G T C A A C T G A G T C C G A T G T A C A G T C A C G T A C T G C G T A C G T A A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

TCF3/MA0522.2/Jaspar

Match Rank:7
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CTTAGCTCCTGAA
---AACACCTGCT
 A G T C A G C T A C G T G T C A A C T G A G T C C G A T G T A C A G T C A C G T A C T G C G T A C G T A
A C G T A C G T A C G T G T C A T C G A A G T C G C T A A T G C A T G C G C A T T C A G A G T C C A G T

Gata4/MA0482.1/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CTTAGCTCCTGAA
TCTTATCTCCC---
 A C G T A G T C A G C T A C G T G T C A A C T G A G T C C G A T G T A C A G T C A C G T A C T G C G T A C G T A
A G C T A T G C A G C T A C G T G T C A A C G T A G T C C G A T A T G C G A T C A G T C A C G T A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CTTAGCTCCTGAA
TACCATAGCAACGGT-
 A C G T A C G T A C G T A G T C A G C T A C G T G T C A A C T G A G T C C G A T G T A C A G T C A C G T A C T G C G T A C G T A
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CTTAGCTCCTGAA
SCCTAGCAACAG--
 A C G T A G T C A G C T A C G T G T C A A C T G A G T C C G A T G T A C A G T C A C G T A C T G C G T A C G T A
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T