Information for 3-CGVASCGACCAAT (Motif 5)

A T G C T A C G T A C G T G C A A T G C T A G C T A C G C T G A A G T C G T A C G T C A G C T A A G C T
Reverse Opposite:
C T G A C A G T A C G T A C T G A C T G A G C T A T G C A T C G T A C G A C G T A T G C A T G C T A C G
p-value:1e-20
log p-value:-4.718e+01
Information Content per bp:1.653
Number of Target Sequences with motif51.0
Percentage of Target Sequences with motif5.76%
Number of Background Sequences with motif488.7
Percentage of Background Sequences with motif1.09%
Average Position of motif in Targets55.5 +/- 27.0bp
Average Position of motif in Background49.5 +/- 34.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFYB/MA0502.1/Jaspar

Match Rank:1
Score:0.81
Offset:1
Orientation:forward strand
Alignment:CGVASCGACCAAT---
-AAATGGACCAATCAG
 A T G C T A C G T A C G T G C A A T G C T A G C T A C G C T G A A G T C G T A C G T C A G C T A A G C T A C G T A C G T A C G T
A C G T T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.79
Offset:6
Orientation:forward strand
Alignment:CGVASCGACCAAT---
------AGCCAATCGG
 A T G C T A C G T A C G T G C A A T G C T A G C T A C G C T G A A G T C G T A C G T C A G C T A A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.78
Offset:3
Orientation:forward strand
Alignment:CGVASCGACCAAT--
---ACTAGCCAATCA
 A T G C T A C G T A C G T G C A A T G C T A G C T A C G C T G A A G T C G T A C G T C A G C T A A G C T A C G T A C G T
A C G T A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFYA/MA0060.2/Jaspar

Match Rank:4
Score:0.73
Offset:4
Orientation:reverse strand
Alignment:CGVASCGACCAAT---------
----TGGACCAATCAGCACTCT
 A T G C T A C G T A C G T G C A A T G C T A G C T A C G C T G A A G T C G T A C G T C A G C T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.66
Offset:6
Orientation:reverse strand
Alignment:CGVASCGACCAAT
------TGCCAA-
 A T G C T A C G T A C G T G C A A T G C T A G C T A C G C T G A A G T C G T A C G T C A G C T A A G C T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

PH0005.1_Barhl1/Jaspar

Match Rank:6
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CGVASCGACCAAT------
---AACAACCAATTAATTC
 A T G C T A C G T A C G T G C A A T G C T A G C T A C G C T G A A G T C G T A C G T C A G C T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T C A C T G A G T A C T C G A C T G A A T G C G A T C C T G A G C T A A C G T G A C T C G T A C T G A A C G T C G A T G A T C

MSX2/MA0708.1/Jaspar

Match Rank:7
Score:0.64
Offset:8
Orientation:forward strand
Alignment:CGVASCGACCAAT---
--------CCAATTAA
 A T G C T A C G T A C G T G C A A T G C T A G C T A C G C T G A A G T C G T A C G T C A G C T A A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A

PH0107.1_Msx2/Jaspar

Match Rank:8
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CGVASCGACCAAT-------
---GAAGACCAATTAGCGCT
 A T G C T A C G T A C G T G C A A T G C T A G C T A C G C T G A A G T C G T A C G T C A G C T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C A G T G C A C T G A T A C G C T G A A T G C G A T C C G T A G T C A C G A T G A C T C T G A C A T G G A T C C A T G G A T C A G C T

PH0109.1_Nkx1-1/Jaspar

Match Rank:9
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CGVASCGACCAAT-------
---NCCCACTAATTAGCGCA
 A T G C T A C G T A C G T G C A A T G C T A G C T A C G C T G A A G T C G T A C G T C A G C T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T G T A C A T G C G A T C T C G A A G T C G A C T G T C A C G T A C G A T A C G T C T G A T C A G A G T C A C T G A T G C G C T A

PH0089.1_Isx/Jaspar

Match Rank:10
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:CGVASCGACCAAT-------
----ACNNCTAATTAGNNNN
 A T G C T A C G T A C G T G C A A T G C T A G C T A C G C T G A A G T C G T A C G T C A G C T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T