Information for 18-GCAGGATCCTGCR (Motif 25)

A T C G A G T C C G T A C T A G A T C G C T G A G A C T A T G C A G T C A C G T A C T G T A G C C T A G
Reverse Opposite:
G A T C A C T G A G T C G T C A C T A G A T C G C T G A A G C T A T G C A G T C A C G T A C T G A T G C
p-value:1e-4
log p-value:-1.031e+01
Information Content per bp:1.783
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.34%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets39.0 +/- 27.4bp
Average Position of motif in Background55.9 +/- 11.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGATCCTGCR
ANCAGGATGT----
 A C G T A T C G A G T C C G T A C T A G A T C G C T G A G A C T A T G C A G T C A C G T A C T G T A G C C T A G
C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T A C G T A C G T A C G T A C G T

ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:2
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GCAGGATCCTGCR
ACAGGATGTGGT-
 A T C G A G T C C G T A C T A G A T C G C T G A G A C T A T G C A G T C A C G T A C T G T A G C C T A G
T C G A T A G C G T C A A C T G C T A G C G T A C G A T A C T G A C G T A C T G A C T G A C G T A C G T

Esrra/MA0592.2/Jaspar

Match Rank:3
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GCAGGATCCTGCR
--ATGACCTTGAA
 A T C G A G T C C G T A C T A G A T C G C T G A G A C T A T G C A G T C A C G T A C T G T A G C C T A G
A C G T A C G T C G T A A G C T T A C G T G C A T G A C T G A C A G C T A G C T A T C G C T G A T G C A

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:4
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----GCAGGATCCTGCR
ATTTCCCAGVAKSCY---
 A C G T A C G T A C G T A C G T A C G T A T C G A G T C C G T A C T A G A T C G C T G A G A C T A T G C A G T C A C G T A C T G T A G C C T A G
T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C A C G T A C G T A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:5
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GCAGGATCCTGCR--
NNNNATGACCTTGANTN
 A C G T A C G T A T C G A G T C C G T A C T A G A T C G C T G A G A C T A T G C A G T C A C G T A C T G T A G C C T A G A C G T A C G T
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A

Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)

Match Rank:6
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGATCCTGCR
NDCAGGAARTNN--
 A C G T A T C G A G T C C G T A C T A G A T C G C T G A G A C T A T G C A G T C A C G T A C T G T A G C C T A G
T G C A C T G A T A G C G T C A A C T G A C T G C G T A G C T A T C A G G A C T T C A G T A C G A C G T A C G T

POL005.1_DPE/Jaspar

Match Rank:7
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GCAGGATCCTGCR
-GAAGATGTT---
 A T C G A G T C C G T A C T A G A T C G C T G A G A C T A T G C A G T C A C G T A C T G T A G C C T A G
A C G T T C A G G T C A C T G A A T C G G C T A G A C T T A C G G A C T G A C T A C G T A C G T A C G T

PB0181.1_Spdef_2/Jaspar

Match Rank:8
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---GCAGGATCCTGCR
CTACTAGGATGTNNTN
 A C G T A C G T A C G T A T C G A G T C C G T A C T A G A T C G C T G A G A C T A T G C A G T C A C G T A C T G T A G C C T A G
A G T C G C A T C G T A T G A C C G A T T C G A T A C G C A T G C G T A G A C T C T A G G A C T C G A T T C G A G C A T G A T C

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-GCAGGATCCTGCR
AACAGGAAGT----
 A C G T A T C G A G T C C G T A C T A G A T C G C T G A G A C T A T G C A G T C A C G T A C T G T A G C C T A G
T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T A C G T A C G T A C G T A C G T

REST/MA0138.2/Jaspar

Match Rank:10
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-GCAGGATCCTGCR-------
TTCAGCACCATGGACAGCGCC
 A C G T A T C G A G T C C G T A C T A G A T C G C T G A G A C T A T G C A G T C A C G T A C T G T A G C C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C