Information for 3-CDDTTTRAAA (Motif 2)

T G A C C T A G C T A G A C G T A C G T A G C T T C A G C G T A C G T A G T C A
Reverse Opposite:
C A G T A C G T A C G T A G T C T C G A C G T A C G T A G A T C G A T C A C T G
p-value:1e-26
log p-value:-6.093e+01
Information Content per bp:1.719
Number of Target Sequences with motif93.0
Percentage of Target Sequences with motif10.50%
Number of Background Sequences with motif1243.5
Percentage of Background Sequences with motif2.78%
Average Position of motif in Targets52.3 +/- 25.6bp
Average Position of motif in Background50.7 +/- 37.8bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.87
Offset:3
Orientation:reverse strand
Alignment:CDDTTTRAAA---
---TTTGAAACCG
 T G A C C T A G C T A G A C G T A C G T A G C T T C A G C G T A C G T A G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.87
Offset:1
Orientation:reverse strand
Alignment:CDDTTTRAAA
-NATTCAAAT
 T G A C C T A G C T A G A C G T A C G T A G C T T C A G C G T A C G T A G T C A
A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

PB0148.1_Mtf1_2/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CDDTTTRAAA----
AAATAAGAAAAAAC
 T G A C C T A G C T A G A C G T A C G T A G C T T C A G C G T A C G T A G T C A A C G T A C G T A C G T A C G T
G C T A C G T A G C T A C A G T G C T A G C T A C A T G G T C A G C T A G C T A G C T A T G C A C G T A T G A C

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CDDTTTRAAA-
-CCTTTGATGT
 T G A C C T A G C T A G A C G T A C G T A G C T T C A G C G T A C G T A G T C A A C G T
A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

Arid3a/MA0151.1/Jaspar

Match Rank:5
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CDDTTTRAAA
---TTTAAT-
 T G A C C T A G C T A G A C G T A C G T A G C T T C A G C G T A C G T A G T C A
A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T

PB0013.1_Eomes_1/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CDDTTTRAAA---
GAAAAGGTGTGAAAATT
 A C G T A C G T A C G T A C G T T G A C C T A G C T A G A C G T A C G T A G C T T C A G C G T A C G T A G T C A A C G T A C G T A C G T
A C G T T C G A G C T A C T G A C T G A C T A G A C T G A G C T C T A G G A C T A C T G C T G A G T C A G T C A G C T A G A C T G A C T

TATA-Box(TBP)/Promoter/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CDDTTTRAAA--
GNCTATAAAAGG
 T G A C C T A G C T A G A C G T A C G T A G C T T C A G C G T A C G T A G T C A A C G T A C G T
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G

PB0034.1_Irf4_1/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CDDTTTRAAA-----
CGTATCGAAACCAAA
 T G A C C T A G C T A G A C G T A C G T A G C T T C A G C G T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T
T G A C C T A G C G A T C G T A G A C T A G T C C T A G T C G A C G T A C G T A T A G C G A T C C T G A G T C A C G T A

TBR1/MA0802.1/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CDDTTTRAAA
AGGTGTGAAA
 T G A C C T A G C T A G A C G T A C G T A G C T T C A G C G T A C G T A G T C A
C T G A C T A G A T C G A G C T A T C G G A C T A C T G C T G A G C T A G C T A

NFAT5/MA0606.1/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CDDTTTRAAA--
--NATGGAAAAN
 T G A C C T A G C T A G A C G T A C G T A G C T T C A G C G T A C G T A G T C A A C G T A C G T
A C G T A C G T G C T A C T G A C G A T T C A G C T A G C G T A C G T A C G T A C G T A A C G T