Information for 20-AGCGACGCGTCGC (Motif 35)

C G T A A C T G G T A C C T A G C G T A A G T C A C T G A G T C C T A G A C G T A G T C A C T G A G T C
Reverse Opposite:
A C T G G T A C C T A G C G T A A G T C A C T G A G T C C T A G A C G T A G T C A C T G A G T C G C A T
p-value:1e-6
log p-value:-1.451e+01
Information Content per bp:1.840
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.43%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.5 +/- 6.1bp
Average Position of motif in Background72.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0117.1_Eomes_2/Jaspar

Match Rank:1
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGCGACGCGTCGC---
GCGGAGGTGTCGCCTC
 C G T A A C T G G T A C C T A G C G T A A G T C A C T G A G T C C T A G A C G T A G T C A C T G A G T C A C G T A C G T A C G T
T A C G A T C G T C A G C T A G C T G A T A C G A T C G A G C T T C A G C G A T G A T C A C T G T A G C A G T C A G C T T A G C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AGCGACGCGTCGC-
GCAGCCAAGCGTGACN
 A C G T A C G T C G T A A C T G G T A C C T A G C G T A A G T C A C T G A G T C C T A G A C G T A G T C A C T G A G T C A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

PB0179.1_Sp100_2/Jaspar

Match Rank:3
Score:0.54
Offset:5
Orientation:forward strand
Alignment:AGCGACGCGTCGC-------
-----TCCGTCGCTTAAAAG
 C G T A A C T G G T A C C T A G C G T A A G T C A C T G A G T C C T A G A C G T A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T A T G C G A T C T C A G G C A T T G A C A C T G G A T C A C G T C A G T G C T A C G T A G C T A C G T A A C T G

PB0147.1_Max_2/Jaspar

Match Rank:4
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:AGCGACGCGTCGC--
-NNGTCGCGTGNCAC
 C G T A A C T G G T A C C T A G C G T A A G T C A C T G A G T C C T A G A C G T A G T C A C T G A G T C A C G T A C G T
A C G T G T A C G C T A A C T G A G C T T G A C C T A G A G T C T C A G G A C T A C T G C T A G G T A C T C G A T G A C

PB0180.1_Sp4_2/Jaspar

Match Rank:5
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AGCGACGCGTCGC---
-CAAAGGCGTGGCCAG
 C G T A A C T G G T A C C T A G C G T A A G T C A C T G A G T C C T A G A C G T A G T C A C T G A G T C A C G T A C G T A C G T
A C G T A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G

PAX5/MA0014.2/Jaspar

Match Rank:6
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------AGCGACGCGTCGC
GAGGGCAGCCAAGCGTGAC
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G G T A C C T A G C G T A A G T C A C T G A G T C C T A G A C G T A G T C A C T G A G T C
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:7
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--AGCGACGCGTCGC
SCAGYCADGCATGAC
 A C G T A C G T C G T A A C T G G T A C C T A G C G T A A G T C A C T G A G T C C T A G A C G T A G T C A C T G A G T C
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Creb3l2/MA0608.1/Jaspar

Match Rank:8
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:AGCGACGCGTCGC
----ACACGTGGC
 C G T A A C T G G T A C C T A G C G T A A G T C A C T G A G T C C T A G A C G T A G T C A C T G A G T C
A C G T A C G T A C G T A C G T G C T A A T G C C G T A A G T C A C T G A C G T A T C G C A T G G T A C

PAX1/MA0779.1/Jaspar

Match Rank:9
Score:0.49
Offset:-3
Orientation:reverse strand
Alignment:---AGCGACGCGTCGC-
NGCANTCATGCGTGACG
 A C G T A C G T A C G T C G T A A C T G G T A C C T A G C G T A A G T C A C T G A G T C C T A G A C G T A G T C A C T G A G T C A C G T
C A G T A C T G G T A C C T G A A T C G A G C T T A G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A G T A C T A C G

Hes1/MA1099.1/Jaspar

Match Rank:10
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:AGCGACGCGTCGC
---NNCGCGTGNN
 C G T A A C T G G T A C C T A G C G T A A G T C A C T G A G T C C T A G A C G T A G T C A C T G A G T C
A C G T A C G T A C G T C A T G C T G A T G A C C T A G A G T C T C A G G A C T C T A G A T G C A T G C