Information for 6-AGTAAAATGTARC (Motif 6)

C G T A C T A G A C G T C G T A C G T A G T C A C G T A A C G T C T A G A C G T C G T A C T A G A G T C
Reverse Opposite:
A C T G A G C T A C G T G T C A A G T C C G T A A C G T A C G T A C G T A C G T G T C A A G T C A C G T
p-value:1e-11
log p-value:-2.595e+01
Information Content per bp:1.863
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets65.3 +/- 31.3bp
Average Position of motif in Background31.0 +/- 2.8bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0075.1_Hoxd10/Jaspar

Match Rank:1
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----AGTAAAATGTARC
AATGCAATAAAATTTAT-
 A C G T A C G T A C G T A C G T A C G T C G T A C T A G A C G T C G T A C G T A G T C A C G T A A C G T C T A G A C G T C G T A C T A G A G T C
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:2
Score:0.64
Offset:5
Orientation:forward strand
Alignment:AGTAAAATGTARC---
-----AATGTATCAAT
 C G T A C T A G A C G T C G T A C G T A G T C A C G T A A C G T C T A G A C G T C G T A C T A G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T

PH0046.1_Hoxa10/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----AGTAAAATGTARC
TAGGTAATAAAATTCA--
 A C G T A C G T A C G T A C G T A C G T C G T A C T A G A C G T C G T A C G T A G T C A C G T A A C G T C T A G A C G T C G T A C T A G A G T C
C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A A C G T A C G T

PH0084.1_Irx3_2/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AGTAAAATGTARC--
NNTATTACATGTANNNT
 A C G T A C G T C G T A C T A G A C G T C G T A C G T A G T C A C G T A A C G T C T A G A C G T C G T A C T A G A G T C A C G T A C G T
G C A T C T G A G C A T G C T A A C G T C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A C G A T G C T A G C A T G C A T

PH0082.1_Irx2/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGTAAAATGTARC---
TAAATACATGTAAAATT
 A C G T C G T A C T A G A C G T C G T A C G T A G T C A C G T A A C G T C T A G A C G T C G T A C T A G A G T C A C G T A C G T A C G T
C G A T C G T A C G T A C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A C G T A C T G A C G T A A C G T G C A T

STAT1::STAT2/MA0517.1/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AGTAAAATGTARC---
-GGAAANTGAAACTNA
 C G T A C T A G A C G T C G T A C G T A G T C A C G T A A C G T C T A G A C G T C G T A C T A G A G T C A C G T A C G T A C G T
A C G T T C A G C T A G C T G A C G T A T C G A T G C A G A C T C T A G T C G A C G T A C T G A A T G C G A C T C T A G G T C A

PH0086.1_Irx5/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGTAAAATGTARC---
AATATACATGTAAAATT
 A C G T C G T A C T A G A C G T C G T A C G T A G T C A C G T A A C G T C T A G A C G T C G T A C T A G A G T C A C G T A C G T A C G T
C G A T C G T A C G A T G C T A C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A G T C A C G T A C G T A A C G T C G A T

PH0083.1_Irx3_1/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGTAAAATGTARC--
ANTATTACATGTANNNN
 A C G T A C G T C G T A C T A G A C G T C G T A C G T A G T C A C G T A A C G T C T A G A C G T C G T A C T A G A G T C A C G T A C G T
G C T A C T A G G C A T G C T A A C G T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A A G C T G C A T G A C T G C A T

PH0078.1_Hoxd13/Jaspar

Match Rank:9
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----AGTAAAATGTARC
CTACCAATAAAATTCT--
 A C G T A C G T A C G T A C G T A C G T C G T A C T A G A C G T C G T A C G T A G T C A C G T A A C G T C T A G A C G T C G T A C T A G A G T C
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T A C G T A C G T

PH0087.1_Irx6/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGTAAAATGTARC---
AAAATACATGTAAAAAT
 A C G T C G T A C T A G A C G T C G T A C G T A G T C A C G T A A C G T C T A G A C G T C G T A C T A G A G T C A C G T A C G T A C G T
G C T A G C T A G C T A C T G A C G A T C G T A A G T C C G T A G C A T C T A G C G A T G C T A G T C A C G T A C G T A G C T A C G A T