Motif 3

Information for 4-CAGCGCCCGCGGG (Motif 3)

Reverse Opposite:

p-value:	1e-11
log p-value:	-2.714e+01
Information Content per bp:	1.882
Number of Target Sequences with motif	12.0
Percentage of Target Sequences with motif	1.29%
Number of Background Sequences with motif	29.1
Percentage of Background Sequences with motif	0.06%
Average Position of motif in Targets	44.2 +/- 27.4bp
Average Position of motif in Background	47.3 +/- 33.4bp
Strand Bias (log2 ratio + to - strand density)	1.6
Multiplicity (# of sites on avg that occur together)	1.00
Motif File:	file (matrix) reverse opposite
SVG Files for Logos:	forward logo reverse opposite

Matches to Known Motifs

HINFP/MA0131.2/Jaspar

Match Rank:	1
Score:	0.70
Offset:	0
Orientation:	forward strand
Alignment:	CAGCGCCCGCGGG CAACGTCCGCGG-

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:	2
Score:	0.65
Offset:	3
Orientation:	reverse strand
Alignment:	CAGCGCCCGCGGG-- ---TGCCCNGGGGCA

TFAP2B/MA0811.1/Jaspar

Match Rank:	3
Score:	0.62
Offset:	3
Orientation:	reverse strand
Alignment:	CAGCGCCCGCGGG-- ---TGCCCTNGGGCA

TFAP2C/MA0524.2/Jaspar

Match Rank:	4
Score:	0.61
Offset:	3
Orientation:	reverse strand
Alignment:	CAGCGCCCGCGGG-- ---TGCCCTNGGGCA

NRF1/MA0506.1/Jaspar

Match Rank:	5
Score:	0.61
Offset:	2
Orientation:	forward strand
Alignment:	CAGCGCCCGCGGG --GCGCCTGCGCA

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:	6
Score:	0.60
Offset:	2
Orientation:	forward strand
Alignment:	CAGCGCCCGCGGG--- --TTGCCCTAGGGCAT

ZBTB33/MA0527.1/Jaspar

Match Rank:	7
Score:	0.59
Offset:	0
Orientation:	reverse strand
Alignment:	CAGCGCCCGCGGG-- NAGNTCTCGCGAGAN

NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer

Match Rank:	8
Score:	0.59
Offset:	0
Orientation:	forward strand
Alignment:	CAGCGCCCGCGGG CTGCGCATGCGC-

PB0085.1_Tcfap2a_1/Jaspar

Match Rank:	9
Score:	0.59
Offset:	1
Orientation:	forward strand
Alignment:	CAGCGCCCGCGGG--- -ATTCCCTGAGGGGAA

PB0087.1_Tcfap2c_1/Jaspar

Match Rank:	10
Score:	0.59
Offset:	1
Orientation:	forward strand
Alignment:	CAGCGCCCGCGGG--- -ATTGCCTGAGGCGAA