Information for 7-GGAGCATTTTGAA (Motif 4)

C T A G T C A G C G T A A T C G A T G C G T C A A C G T A C G T A C G T A G C T A T C G C G T A C T G A
Reverse Opposite:
A G C T C G A T A T G C T C G A G T C A C G T A C G T A A C G T T A C G A T G C A C G T A G T C A G T C
p-value:1e-10
log p-value:-2.505e+01
Information Content per bp:1.801
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif15.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets59.1 +/- 30.4bp
Average Position of motif in Background47.6 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.65
Offset:6
Orientation:forward strand
Alignment:GGAGCATTTTGAA--
------ATTTGAATT
 C T A G T C A G C G T A A T C G A T G C G T C A A C G T A C G T A C G T A G C T A T C G C G T A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.65
Offset:7
Orientation:reverse strand
Alignment:GGAGCATTTTGAA----
-------TTTGAAACCG
 C T A G T C A G C G T A A T C G A T G C G T C A A C G T A C G T A C G T A G C T A T C G C G T A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

PB0099.1_Zfp691_1/Jaspar

Match Rank:3
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----GGAGCATTTTGAA
NNNNTGAGCACTGTNNG
 A C G T A C G T A C G T A C G T C T A G T C A G C G T A A T C G A T G C G T C A A C G T A C G T A C G T A G C T A T C G C G T A C T G A
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:GGAGCATTTTGAA--
-----CCTTTGATGT
 C T A G T C A G C G T A A T C G A T G C G T C A A C G T A C G T A C G T A G C T A T C G C G T A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

PB0145.1_Mafb_2/Jaspar

Match Rank:5
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GGAGCATTTTGAA----
--ANATTTTTGCAANTN
 C T A G T C A G C G T A A T C G A T G C G T C A A C G T A C G T A C G T A G C T A T C G C G T A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T C G T A G A C T C G T A C G A T G C A T C G A T G C A T A G C T C T A G T A G C T G C A T G C A G C A T A G C T C A T G

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCATTTTGAA
GGGAGGACNG----
 A C G T C T A G T C A G C G T A A T C G A T G C G T C A A C G T A C G T A C G T A G C T A T C G C G T A C T G A
C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G A C G T A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:7
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCATTTTGAA
CGGAGC--------
 A C G T C T A G T C A G C G T A A T C G A T G C G T C A A C G T A C G T A C G T A G C T A T C G C G T A C T G A
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CEBPA/MA0102.3/Jaspar

Match Rank:8
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:GGAGCATTTTGAA--
----NATTGTGCAAT
 C T A G T C A G C G T A A T C G A T G C G T C A A C G T A C G T A C G T A G C T A T C G C G T A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T C A G T T C G A A C G T A C G T C T A G A C G T A C T G G T A C C G T A C G T A A G C T

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:9
Score:0.49
Offset:-4
Orientation:forward strand
Alignment:----GGAGCATTTTGAA
ACTCCAAGTACTTGGAA
 A C G T A C G T A C G T A C G T C T A G T C A G C G T A A T C G A T G C G T C A A C G T A C G T A C G T A G C T A T C G C G T A C T G A
T C G A G T A C C G A T A T G C T A G C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A C T G T C A G T G C A G T C A

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:GGAGCATTTTGAA
-NGGGATTA----
 C T A G T C A G C G T A A T C G A T G C G T C A A C G T A C G T A C G T A G C T A T C G C G T A C T G A
A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T A C G T A C G T