Information for 8-AGTTCAGAAT (Motif 20)

C G T A A C T G A C G T A C G T A G T C C G T A A C T G C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T A G T C A C G T A C T G C G T A C G T A A G T C A C G T
p-value:1e-6
log p-value:-1.516e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets31.8 +/- 19.3bp
Average Position of motif in Background12.9 +/- 1.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---AGTTCAGAAT
CAAAGGTCAG---
 A C G T A C G T A C G T C G T A A C T G A C G T A C G T A G T C C G T A A C T G C G T A C G T A A C G T
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T

CEBPA/MA0102.3/Jaspar

Match Rank:2
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGTTCAGAAT-
ATTGCACAATA
 C G T A A C T G A C G T A C G T A G T C C G T A A C T G C G T A C G T A A C G T A C G T
T C G A A C G T A C G T C A T G A G T C T G C A G A T C G T C A C G T A A G C T G T C A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AGTTCAGAAT
TRAGGTCA----
 A C G T A C G T C G T A A C T G A C G T A C G T A G T C C G T A A C T G C G T A C G T A A C G T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGTTCAGAAT
AGGTCA----
 C G T A A C T G A C G T A C G T A G T C C G T A A C T G C G T A C G T A A C G T
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T

PB0115.1_Ehf_2/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AGTTCAGAAT-----
AAGATCGGAANTNNNA
 A C G T C G T A A C T G A C G T A C G T A G T C C G T A A C T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
C G T A G C T A A T C G C G T A C G A T T G A C C A T G C T A G C G T A C G T A T G C A G A C T G T C A A G T C G C A T G C T A

RORA/MA0071.1/Jaspar

Match Rank:6
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----AGTTCAGAAT
ATCAAGGTCA----
 A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C G T A G T C C G T A A C T G C G T A C G T A A C G T
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T

GATA2/MA0036.2/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--AGTTCAGAAT--
NCAGATAAGAANNN
 A C G T A C G T C G T A A C T G A C G T A C G T A G T C C G T A A C T G C G T A C G T A A C G T A C G T A C G T
C G T A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T A C G T C G A C G T A G A C T G A T C G C A T

PB0021.1_Gata3_1/Jaspar

Match Rank:8
Score:0.55
Offset:-7
Orientation:forward strand
Alignment:-------AGTTCAGAAT-----
TTTTTAGAGATAAGAAATAAAG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C G T A G T C C G T A A C T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C A G T G C A T C A G T C G A T C T G A C A T G G C T A A C T G C G T A C G A T G C T A C G T A T A C G T G C A C T G A G C T A A C G T C G T A G T C A T C G A C A T G

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AGTTCAGAAT
AAGGTCAC---
 A C G T C G T A A C T G A C G T A C G T A G T C C G T A A C T G C G T A C G T A A C G T
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T

Gata1/MA0035.3/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--AGTTCAGAAT
ANAGATAAGAA-
 A C G T A C G T C G T A A C T G A C G T A C G T A G T C C G T A A C T G C G T A C G T A A C G T
C T G A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T C A G T C G A T C G A A C G T