Information for 9-CCGGGGACTTCCCCAT (Motif 9)

A G T C G T A C A T C G A C T G C T A G T A C G C G T A G T A C C G A T A C G T A T G C T A G C A G T C G T A C G T C A A G C T
Reverse Opposite:
T C G A A C G T A C T G A C T G A C T G T A C G T G C A C G T A A C T G C G A T A G T C A G T C A G T C T A G C C A T G A C T G
p-value:1e-10
log p-value:-2.402e+01
Information Content per bp:1.714
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.44%
Number of Background Sequences with motif17.4
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets65.1 +/- 16.5bp
Average Position of motif in Background54.8 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CCGGGGACTTCCCCAT
---GGGAAATCCCCN-
 A G T C G T A C A T C G A C T G C T A G T A C G C G T A G T A C C G A T A C G T A T G C T A G C A G T C G T A C G T C A A G C T
A C G T A C G T A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:2
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CCGGGGACTTCCCCAT
--GGGGATTCCCCC--
 A G T C G T A C A T C G A C T G C T A G T A C G C G T A G T A C C G A T A C G T A T G C T A G C A G T C G T A C G T C A A G C T
A C G T A C G T A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C A C G T A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CCGGGGACTTCCCCAT
-AGGGGATTCCCCT--
 A G T C G T A C A T C G A C T G C T A G T A C G C G T A G T A C C G A T A C G T A T G C T A G C A G T C G T A C G T C A A G C T
A C G T T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:4
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CCGGGGACTTCCCCAT
---GGGGATTTCC---
 A G T C G T A C A T C G A C T G C T A G T A C G C G T A G T A C C G A T A C G T A T G C T A G C A G T C G T A C G T C A A G C T
A C G T A C G T A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CCGGGGACTTCCCCAT
---GGAAATTCCC---
 A G T C G T A C A T C G A C T G C T A G T A C G C G T A G T A C C G A T A C G T A T G C T A G C A G T C G T A C G T C A A G C T
A C G T A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:6
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CCGGGGACTTCCCCAT
---GGGAATTTCC---
 A G T C G T A C A T C G A C T G C T A G T A C G C G T A G T A C C G A T A C G T A T G C T A G C A G T C G T A C G T C A A G C T
A C G T A C G T A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCGGGGACTTCCCCAT
-AGGGGAATCCCCT--
 A G T C G T A C A T C G A C T G C T A G T A C G C G T A G T A C C G A T A C G T A T G C T A G C A G T C G T A C G T C A A G C T
A C G T T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CCGGGGACTTCCCCAT
--GGGGATTTCC----
 A G T C G T A C A T C G A C T G C T A G T A C G C G T A G T A C C G A T A C G T A T G C T A G C A G T C G T A C G T C A A G C T
A C G T A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T A C G T A C G T

MZF1/MA0056.1/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CCGGGGACTTCCCCAT
-TGGGGA---------
 A G T C G T A C A T C G A C T G C T A G T A C G C G T A G T A C C G A T A C G T A T G C T A G C A G T C G T A C G T C A A G C T
A C G T A G C T A C T G C T A G A C T G A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0058.1_Sfpi1_1/Jaspar

Match Rank:10
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CCGGGGACTTCCCCAT--
----NNACTTCCTCTTNN
 A G T C G T A C A T C G A C T G C T A G T A C G C G T A G T A C C G A T A C G T A T G C T A G C A G T C G T A C G T C A A G C T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T G C T A C T G A A T G C C G A T C G A T A G T C A G T C A C G T A G T C G C A T G C A T G C T A T C G A