Information for 4-CWGSCAYRAKMAAKYC (Motif 4)

A T G C C G T A A T C G A T G C A G T C C G T A A G T C T C G A C T G A A C T G T G A C C G T A C T G A A C G T G A C T A G T C
Reverse Opposite:
A C T G C T G A G T C A A G C T A C G T A C T G G T A C A G C T A G C T C T A G C G A T A C T G T A C G A T G C C G A T A T C G
p-value:1e-11
log p-value:-2.723e+01
Information Content per bp:1.805
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.90%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.2 +/- 19.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CWGSCAYRAKMAAKYC-
-TGCCAAAATAAACANN
 A T G C C G T A A T C G A T G C A G T C C G T A A G T C T C G A C T G A A C T G T G A C C G T A C T G A A C G T G A C T A G T C A C G T
A C G T C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer

Match Rank:2
Score:0.50
Offset:5
Orientation:forward strand
Alignment:CWGSCAYRAKMAAKYC
-----ACVAGGAAGT-
 A T G C C G T A A T C G A T G C A G T C C G T A A G T C T C G A C T G A A C T G T G A C C G T A C T G A A C G T G A C T A G T C
A C G T A C G T A C G T A C G T A C G T G C T A A G T C T A C G T G C A A T C G T C A G G C T A T C G A T C A G A G C T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-CWGSCAYRAKMAAKYC
CTTGGCAA---------
 A C G T A T G C C G T A A T C G A T G C A G T C C G T A A G T C T C G A C T G A A C T G T G A C C G T A C T G A A C G T G A C T A G T C
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer

Match Rank:4
Score:0.49
Offset:5
Orientation:forward strand
Alignment:CWGSCAYRAKMAAKYC
-----ANCAGGAAGT-
 A T G C C G T A A T C G A T G C A G T C C G T A A G T C T C G A C T G A A C T G T G A C C G T A C T G A A C G T G A C T A G T C
A C G T A C G T A C G T A C G T A C G T C G T A T G A C T A G C T G C A A C T G A C T G C G T A C G T A T C A G G A C T A C G T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:5
Score:0.49
Offset:2
Orientation:forward strand
Alignment:CWGSCAYRAKMAAKYC-
--ACCGTGACTAATTNN
 A T G C C G T A A T C G A T G C A G T C C G T A A G T C T C G A C T G A A C T G T G A C C G T A C T G A A C G T G A C T A G T C A C G T
A C G T A C G T C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

PH0130.1_Otx2/Jaspar

Match Rank:6
Score:0.48
Offset:4
Orientation:reverse strand
Alignment:CWGSCAYRAKMAAKYC-----
----GANNATTAATCCCTNNN
 A T G C C G T A A T C G A T G C A G T C C G T A A G T C T C G A C T G A A C T G T G A C C G T A C T G A A C G T G A C T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G G T C A G A T C C T G A T C G A G A C T C G A T C G T A C G T A C A G T G A T C A G T C A G T C A G C T G C T A G A T C G T C A

PB0147.1_Max_2/Jaspar

Match Rank:7
Score:0.48
Offset:0
Orientation:forward strand
Alignment:CWGSCAYRAKMAAKYC
GTGCCACGCGACTG--
 A T G C C G T A A T C G A T G C A G T C C G T A A G T C T C G A C T G A A C T G T G A C C G T A C T G A A C G T G A C T A G T C
A C T G A G C T A C T G G A T C A G T C C G T A A G T C T C A G G A T C A C T G T C G A T G A C C A G T C A T G A C G T A C G T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:8
Score:0.48
Offset:4
Orientation:forward strand
Alignment:CWGSCAYRAKMAAKYC
----HNRAATCAAT--
 A T G C C G T A A T C G A T G C A G T C C G T A A G T C T C G A C T G A A C T G T G A C C G T A C T G A A C G T G A C T A G T C
A C G T A C G T A C G T A C G T G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.47
Offset:-2
Orientation:reverse strand
Alignment:--CWGSCAYRAKMAAKYC
GGTTGGCAT---------
 A C G T A C G T A T G C C G T A A T C G A T G C A G T C C G T A A G T C T C G A C T G A A C T G T G A C C G T A C T G A A C G T G A C T A G T C
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:10
Score:0.47
Offset:-6
Orientation:forward strand
Alignment:------CWGSCAYRAKMAAKYC
CAAATCCAGACATCACA-----
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C C G T A A T C G A T G C A G T C C G T A A G T C T C G A C T G A A C T G T G A C C G T A C T G A A C G T G A C T A G T C
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T A C G T A C G T A C G T