Information for 9-CAATGAGCCC (Motif 17)

A G T C C G T A C G T A A C G T A C T G C G T A A C T G A G T C A G T C A G T C
Reverse Opposite:
A C T G A C T G A C T G A G T C A C G T A G T C C G T A A C G T A C G T A C T G
p-value:1e-5
log p-value:-1.316e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.43%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets60.0 +/- 23.3bp
Average Position of motif in Background46.3 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

EN2/MA0642.1/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CAATGAGCCC
CCCAATTAGC--
 A C G T A C G T A G T C C G T A C G T A A C G T A C T G C G T A A C T G A G T C A G T C A G T C
T A G C A T G C A G T C T G C A T G C A A C G T A G C T C T G A T A C G A T G C A C G T A C G T

POU6F2/MA0793.1/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CAATGAGCCC
NTAATGAGCT-
 A C G T A G T C C G T A C G T A A C G T A C T G C G T A A C T G A G T C A G T C A G T C
C G T A C G A T T G C A C T G A C A G T C A T G G T C A C T A G A T G C G A C T A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:3
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CAATGAGCCC
--ATAATCCC
 A G T C C G T A C G T A A C G T A C T G C G T A A C T G A G T C A G T C A G T C
A C G T A C G T G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CAATGAGCCC-
ACAAAGGNBCCT
 A C G T A G T C C G T A C G T A A C G T A C T G C G T A A C T G A G T C A G T C A G T C A C G T
G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

PB0132.1_Hbp1_2/Jaspar

Match Rank:5
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------CAATGAGCCC-
NNTNNACAATGGGANNN
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C T G C G T A A C T G A G T C A G T C A G T C A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

NFYB/MA0502.1/Jaspar

Match Rank:6
Score:0.64
Offset:-8
Orientation:forward strand
Alignment:--------CAATGAGCCC
AAATGGACCAATCAG---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C T G C G T A A C T G A G T C A G T C A G T C
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--CAATGAGCCC
GACAATGNN---
 A C G T A C G T A G T C C G T A C G T A A C G T A C T G C G T A A C T G A G T C A G T C A G T C
T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:8
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CAATGAGCCC
AGCCAATCGG---
 A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C T G C G T A A C T G A G T C A G T C A G T C
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:9
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----CAATGAGCCC---
TGGACCAATCAGCACTCT
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A A C G T A C T G C G T A A C T G A G T C A G T C A G T C A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

PB0057.1_Rxra_1/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CAATGAGCCC-----
TGTCGTGACCCCTTAAT
 A C G T A C G T A G T C C G T A C G T A A C G T A C T G C G T A A C T G A G T C A G T C A G T C A C G T A C G T A C G T A C G T A C G T
C A G T A T C G G A C T A G T C C A T G A G C T T C A G G T C A G T A C G T A C A G T C A G T C C G A T G A C T T C G A G T C A A G C T