Information for 4-CTCTAGTGGCTRHAMT (Motif 2)

A T G C G A C T A G T C A G C T C T G A A C T G A C G T C T A G C A T G A T G C G A C T C T A G G C T A C G T A T G A C A C G T
Reverse Opposite:
C G T A A C T G A C G T C G A T A G T C C T G A A T C G G A T C A G T C G T C A A G T C G A C T C T G A A C T G C T G A A T C G
p-value:1e-32
log p-value:-7.380e+01
Information Content per bp:1.716
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.09%
Number of Background Sequences with motif7.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets58.5 +/- 16.3bp
Average Position of motif in Background60.8 +/- 23.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.56
Offset:-8
Orientation:forward strand
Alignment:--------CTCTAGTGGCTRHAMT
ANAGTGCCACCTGGTGGCCA----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A G T C A G C T C T G A A C T G A C G T C T A G C A T G A T G C G A C T C T A G G C T A C G T A T G A C A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A A C G T A C G T A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.56
Offset:-7
Orientation:reverse strand
Alignment:-------CTCTAGTGGCTRHAMT
TAGCGCCCCCTGGTGGCCA----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A G T C A G C T C T G A A C T G A C G T C T A G C A T G A T G C G A C T C T A G G C T A C G T A T G A C A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A A C G T A C G T A C G T A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:3
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CTCTAGTGGCTRHAMT
NANTTTCAAGTGGTTAN---
 A C G T A C G T A C G T A C G T A T G C G A C T A G T C A G C T C T G A A C T G A C G T C T A G C A T G A T G C G A C T C T A G G C T A C G T A T G A C A C G T
G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T A C G T A C G T A C G T

PH0171.1_Nkx2-1/Jaspar

Match Rank:4
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CTCTAGTGGCTRHAMT
AANTTCAAGTGGCTTN---
 A C G T A C G T A C G T A T G C G A C T A G T C A G C T C T G A A C T G A C G T C T A G C A T G A T G C G A C T C T A G G C T A C G T A T G A C A C G T
C G T A C G T A C A G T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G T A G C G A C T A C G T T C G A A C G T A C G T A C G T

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CTCTAGTGGCTRHAMT
RTCATGTGAC------
 A T G C G A C T A G T C A G C T C T G A A C T G A C G T C T A G C A T G A T G C G A C T C T A G G C T A C G T A T G A C A C G T
T C A G A G C T A T G C C G T A A G C T T C A G C A G T A C T G C T G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:6
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CTCTAGTGGCTRHAMT
TCCCNNGGGACN-----
 A C G T A T G C G A C T A G T C A G C T C T G A A C T G A C G T C T A G C A T G A T G C G A C T C T A G G C T A C G T A T G A C A C G T
G A C T A G T C A G T C A G T C G A C T C T G A A C T G C T A G A C T G C T G A T A G C G A T C A C G T A C G T A C G T A C G T A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:7
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CTCTAGTGGCTRHAMT
AATTTCAAGTGGCTTN---
 A C G T A C G T A C G T A T G C G A C T A G T C A G C T C T G A A C T G A C G T C T A G C A T G A T G C G A C T C T A G G C T A C G T A T G A C A C G T
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A A C G T A C G T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:8
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:CTCTAGTGGCTRHAMT
NTCAAGTGG-------
 A T G C G A C T A G T C A G C T C T G A A C T G A C G T C T A G C A T G A T G C G A C T C T A G G C T A C G T A T G A C A C G T
A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.51
Offset:-10
Orientation:forward strand
Alignment:----------CTCTAGTGGCTRHAMT
CNNBRGCGCCCCCTGSTGGC------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A G T C A G C T C T G A A C T G A C G T C T A G C A T G A T G C G A C T C T A G G C T A C G T A T G A C A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T A C G T A C G T A C G T A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:10
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:CTCTAGTGGCTRHAMT
NTCAAGTGGN------
 A T G C G A C T A G T C A G C T C T G A A C T G A C G T C T A G C A T G A T G C G A C T C T A G G C T A C G T A T G A C A C G T
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T