Information for 3-AGAGGCACAGGCA (Motif 5)

C G T A A T C G C G T A C T A G A C T G G A T C C G T A A G T C C G T A A C T G A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C T A G C A C G T A C T G A C G T C A T G A G T C A G T C A C G T A T G C A C G T
p-value:1e-13
log p-value:-3.098e+01
Information Content per bp:1.897
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets62.3 +/- 22.3bp
Average Position of motif in Background29.9 +/- 21.6bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGAGGCACAGGCA
CCAGGAACAG---
 C G T A A T C G C G T A C T A G A C T G G A T C C G T A A G T C C G T A A C T G A C T G A G T C C G T A
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:2
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AGAGGCACAGGCA
AAGGKGRCGCAGGCA
 A C G T A C G T C G T A A T C G C G T A C T A G A C T G G A T C C G T A A G T C C G T A A C T G A C T G A G T C C G T A
T G C A C G T A A C T G T C A G C A G T C A T G T C A G G A T C T A C G A G T C T G C A A C T G A C T G T G A C G T C A

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGAGGCACAGGCA-
ACATGCCCGGGCAT
 C G T A A T C G C G T A C T A G A C T G G A T C C G T A A G T C C G T A A C T G A C T G A G T C C G T A A C G T
C T G A T A G C G C T A C G A T A T C G A G T C G A T C G A T C C T A G T C A G T C A G G T A C G C T A C A G T

PB0130.1_Gm397_2/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGAGGCACAGGCA---
AGCGGCACACACGCAA
 C G T A A T C G C G T A C T A G A C T G G A T C C G T A A G T C C G T A A C T G A C T G A G T C C G T A A C G T A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:5
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:AGAGGCACAGGCA
-------CACGCA
 C G T A A T C G C G T A C T A G A C T G G A T C C G T A A G T C C G T A A C T G A C T G A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.54
Offset:5
Orientation:forward strand
Alignment:AGAGGCACAGGCA--
-----AACAGGAAGT
 C G T A A T C G C G T A C T A G A C T G G A T C C G T A A G T C C G T A A C T G A C T G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T

EGR2/MA0472.2/Jaspar

Match Rank:7
Score:0.54
Offset:2
Orientation:forward strand
Alignment:AGAGGCACAGGCA
--ACGCCCACGCA
 C G T A A T C G C G T A C T A G A C T G G A T C C G T A A G T C C G T A A C T G A C T G A G T C C G T A
A C G T A C G T G T C A A G T C C T A G A G T C T G A C A G T C T G C A A G T C C A T G A G T C C T G A

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:8
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:AGAGGCACAGGCA
TGAGTGACAGSC-
 C G T A A T C G C G T A C T A G A C T G G A T C C G T A A G T C C G T A A C T G A C T G A G T C C G T A
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:AGAGGCACAGGCA
-----CACAGN--
 C G T A A T C G C G T A C T A G A C T G G A T C C G T A A G T C C G T A A C T G A C T G A G T C C G T A
A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T

SPIB/MA0081.1/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AGAGGCACAGGCA
AGAGGAA------
 C G T A A T C G C G T A C T A G A C T G G A T C C G T A A G T C C G T A A C T G A C T G A G T C C G T A
C G T A T A C G T G C A C T A G C A T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T