Information for 5-GTKWMTKCACASWRTK (Motif 13)

A T C G A C G T A C T G C G T A G T A C A C G T A C G T A G T C C G T A A G T C C G T A A T C G G C T A C T A G A C G T A C T G
Reverse Opposite:
G T A C C G T A G A T C C G A T A T G C A C G T A C T G A C G T A C T G G T C A C G T A C A T G C G A T G T A C C G T A A T G C
p-value:1e-8
log p-value:-1.944e+01
Information Content per bp:1.807
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.52%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.3 +/- 27.8bp
Average Position of motif in Background67.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0026.1_Gm397_1/Jaspar

Match Rank:1
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GTKWMTKCACASWRTK
NNGTATGTGCACATNNN-
 A C G T A C G T A T C G A C G T A C T G C G T A G T A C A C G T A C G T A G T C C G T A A G T C C G T A A T C G G C T A C T A G A C G T A C T G
C T G A G T A C C A T G C A G T T C G A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A G C A T G T A C C G A T C A T G A C G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:2
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GTKWMTKCACASWRTK
-----TTMACACCTT-
 A T C G A C G T A C T G C G T A G T A C A C G T A C G T A G T C C G T A A G T C C G T A A T C G G C T A C T A G A C G T A C T G
A C G T A C G T A C G T A C G T A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T A C G T

FOXH1/MA0479.1/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GTKWMTKCACASWRTK
TCCAATCCACA-----
 A T C G A C G T A C T G C G T A G T A C A C G T A C G T A G T C C G T A A G T C C G T A A T C G G C T A C T A G A C G T A C T G
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T

PB0104.1_Zscan4_1/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GTKWMTKCACASWRTK
NTNTATGTGCACATNNN-
 A C G T A C G T A T C G A C G T A C T G C G T A G T A C A C G T A C G T A G T C C G T A A G T C C G T A A T C G G C T A C T A G A C G T A C T G
C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A A C G T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GTKWMTKCACASWRTK
-SSAATCCACANN---
 A T C G A C G T A C T G C G T A G T A C A C G T A C G T A G T C C G T A A G T C C G T A A T C G G C T A C T A G A C G T A C T G
A C G T A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C A C G T A C G T A C G T

TBX21/MA0690.1/Jaspar

Match Rank:6
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:GTKWMTKCACASWRTK
-----TTCACACCTT-
 A T C G A C G T A C T G C G T A G T A C A C G T A C G T A G T C C G T A A G T C C G T A A T C G G C T A C T A G A C G T A C T G
A C G T A C G T A C G T A C G T A C G T C G A T A G C T T G A C C T G A G T A C T C G A T G A C G A T C G A C T G A C T A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GTKWMTKCACASWRTK-
--ATTTGCATACAATGG
 A T C G A C G T A C T G C G T A G T A C A C G T A C G T A G T C C G T A A G T C C G T A A T C G G C T A C T A G A C G T A C T G A C G T
A C G T A C G T G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

EOMES/MA0800.1/Jaspar

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GTKWMTKCACASWRTK
--NTTTTCACACCTT-
 A T C G A C G T A C T G C G T A G T A C A C G T A C G T A G T C C G T A A G T C C G T A A T C G G C T A C T A G A C G T A C T G
A C G T A C G T C T G A G C A T C A G T C G A T A G C T T G A C C T G A A G T C T C G A T G A C G A T C G A C T G A C T A C G T

TBX20/MA0689.1/Jaspar

Match Rank:9
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GTKWMTKCACASWRTK
----CTTCACACCTA-
 A T C G A C G T A C T G C G T A G T A C A C G T A C G T A G T C C G T A A G T C C G T A A T C G G C T A C T A G A C G T A C T G
A C G T A C G T A C G T A C G T A G T C G C A T G C A T G T A C G T C A T G A C G T C A G T A C A G T C G A C T G C T A A C G T

PB0013.1_Eomes_1/Jaspar

Match Rank:10
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GTKWMTKCACASWRTK--
-NNTTTTCACACCTTNNN
 A T C G A C G T A C T G C G T A G T A C A C G T A C G T A G T C C G T A A G T C C G T A A T C G G C T A C T A G A C G T A C T G A C G T A C G T
A C G T C T G A C T G A C G A T C A G T C A G T A G C T T G A C C T G A A G T C C T G A T A G C G A T C G A C T G A C T C G A T A G C T T G A C