Information for 3-CGGCCATTTT (Motif 5)

T A G C T C A G T C A G A T G C A T G C G T C A A C G T C G A T A C G T G A C T
Reverse Opposite:
C T G A T G C A G C T A T G C A C A G T A T C G T A C G A G T C A G T C A T C G
p-value:1e-11
log p-value:-2.553e+01
Information Content per bp:1.659
Number of Target Sequences with motif66.0
Percentage of Target Sequences with motif8.46%
Number of Background Sequences with motif1577.8
Percentage of Background Sequences with motif3.30%
Average Position of motif in Targets49.5 +/- 27.7bp
Average Position of motif in Background50.6 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.85
Offset:-1
Orientation:reverse strand
Alignment:-CGGCCATTTT-
GCNGCCATCTTG
 A C G T T A G C T C A G T C A G A T G C A T G C G T C A A C G T C G A T A C G T G A C T A C G T
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-CGGCCATTTT-
GCCGCCATCTTG
 A C G T T A G C T C A G T C A G A T G C A T G C G T C A A C G T C G A T A C G T G A C T A C G T
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--CGGCCATTTT
GTCCGCCATTA-
 A C G T A C G T T A G C T C A G T C A G A T G C A T G C G T C A A C G T C G A T A C G T G A C T
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T

Sox2/MA0143.3/Jaspar

Match Rank:4
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CGGCCATTTT-
---CCTTTGTT
 T A G C T C A G T C A G A T G C A T G C G T C A A C G T C G A T A C G T G A C T A C G T
A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CGGCCATTTT---
---CCATTGTTYB
 T A G C T C A G T C A G A T G C A T G C G T C A A C G T C G A T A C G T G A C T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

PB0164.1_Smad3_2/Jaspar

Match Rank:6
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------CGGCCATTTT-
TACGCCCCGCCACTCTG
 A C G T A C G T A C G T A C G T A C G T A C G T T A G C T C A G T C A G A T G C A T G C G T C A A C G T C G A T A C G T G A C T A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CGGCCATTTT-
---CCWTTGTY
 T A G C T C A G T C A G A T G C A T G C G T C A A C G T C G A T A C G T G A C T A C G T
A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:8
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CGGCCATTTT--
--NCCATTGTTY
 T A G C T C A G T C A G A T G C A T G C G T C A A C G T C G A T A C G T G A C T A C G T A C G T
A C G T A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T

KLF13/MA0657.1/Jaspar

Match Rank:9
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------CGGCCATTTT--
ATGCCACGCCCCTTTTTG
 A C G T A C G T A C G T A C G T A C G T A C G T T A G C T C A G T C A G A T G C A T G C G T C A A C G T C G A T A C G T G A C T A C G T A C G T
C T G A C A G T C T A G G T A C G T A C C T G A A T G C C T A G A G T C G T A C G A T C G T A C A G C T G A C T C A G T C A G T C A G T C A T G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CGGCCATTTT--
--NCCATTGTTC
 T A G C T C A G T C A G A T G C A T G C G T C A A C G T C G A T A C G T G A C T A C G T A C G T
A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C