Information for 6-CCGGCACCTSCTGGYG (Motif 9)

A G T C A T G C A C T G C T A G A G T C C G T A A T G C A T G C A C G T A T C G T A G C C G A T A C T G A T C G A G T C A T C G
Reverse Opposite:
A T G C C T A G A T G C A G T C C G T A A T C G A T G C G T C A A T C G A T C G A C G T A C T G G A T C A G T C A T C G A C T G
p-value:1e-11
log p-value:-2.669e+01
Information Content per bp:1.823
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets57.6 +/- 19.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CCGGCACCTSCTGGYG-
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A G T C A T G C A C T G C T A G A G T C C G T A A T G C A T G C A C G T A T C G T A G C C G A T A C T G A T C G A G T C A T C G A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CCGGCACCTSCTGGYG
CNNBRGCGCCCCCTGSTGGC-
 A C G T A C G T A C G T A C G T A C G T A G T C A T G C A C T G C T A G A G T C C G T A A T G C A T G C A C G T A T C G T A G C C G A T A C T G A T C G A G T C A T C G
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CCGGCACCTSCTGGYG-
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A G T C A T G C A C T G C T A G A G T C C G T A A T G C A T G C A C G T A T C G T A G C C G A T A C T G A T C G A G T C A T C G A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CCGGCACCTSCTGGYG
-SNGCACCTGCHS---
 A G T C A T G C A C T G C T A G A G T C C G T A A T G C A T G C A C G T A T C G T A G C C G A T A C T G A T C G A G T C A T C G
A C G T T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T A C G T

PB0117.1_Eomes_2/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CCGGCACCTSCTGGYG
NNGGCGACACCTCNNN---
 A C G T A C G T A C G T A G T C A T G C A C T G C T A G A G T C C G T A A T G C A T G C A C G T A T C G T A G C C G A T A C T G A T C G A G T C A T C G
A T C G T C G A T C A G A T C G T G A C C T A G G C T A A G T C C T G A A T G C A G T C G A C T G A T C A G T C T A C G A G T C A C G T A C G T A C G T

MF0007.1_bHLH(zip)_class/Jaspar

Match Rank:6
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CCGGCACCTSCTGGYG
----CACGTGNT----
 A G T C A T G C A C T G C T A G A G T C C G T A A T G C A T G C A C G T A T C G T A G C C G A T A C T G A T C G A G T C A T C G
A C G T A C G T A C G T A C G T G A T C C G T A A T G C T A C G G A C T C T A G A T C G A G C T A C G T A C G T A C G T A C G T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CCGGCACCTSCTGGYG
--NNCACCTGNN----
 A G T C A T G C A C T G C T A G A G T C C G T A A T G C A T G C A C G T A T C G T A G C C G A T A C T G A T C G A G T C A T C G
A C G T A C G T A T G C T G C A A G T C C G T A A G T C A G T C A C G T A C T G A T G C G T C A A C G T A C G T A C G T A C G T

SNAI2/MA0745.1/Jaspar

Match Rank:8
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CCGGCACCTSCTGGYG
---NCACCTGTN----
 A G T C A T G C A C T G C T A G A G T C C G T A A T G C A T G C A C G T A T C G T A G C C G A T A C T G A T C G A G T C A T C G
A C G T A C G T A C G T T C G A G T A C C T G A G A T C G A T C C G A T C A T G G A C T G A C T A C G T A C G T A C G T A C G T

ID4/MA0824.1/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CCGGCACCTSCTGGYG
--TACACCTGTC----
 A G T C A T G C A C T G C T A G A G T C C G T A A T G C A T G C A C G T A T C G T A G C C G A T A C T G A T C G A G T C A T C G
A C G T A C G T C A G T T C G A A G T C C T G A A T G C T A G C C G A T T C A G A G C T G A T C A C G T A C G T A C G T A C G T

Hes2/MA0616.1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCGGCACCTSCTGGYG
TAACGACACGTGC-----
 A C G T A C G T A G T C A T G C A C T G C T A G A G T C C G T A A T G C A T G C A C G T A T C G T A G C C G A T A C T G A T C G A G T C A T C G
A C G T C G T A C G T A T A G C A T C G C T G A G T A C C T G A G T A C C T A G A C G T C T A G G T A C A C G T A C G T A C G T A C G T A C G T