Information for 3-CAGCAGGGGGCGC (Motif 4)

A G T C C G T A T A C G A G T C G C T A A C T G A T C G C T A G A T C G T A C G G T A C C T A G A G T C
Reverse Opposite:
A C T G A G T C C A T G A T G C A T G C G A T C A T G C A G T C C A G T A C T G A T G C G A C T C T A G
p-value:1e-13
log p-value:-3.084e+01
Information Content per bp:1.773
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif3.08%
Number of Background Sequences with motif138.0
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets48.3 +/- 26.2bp
Average Position of motif in Background48.6 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.83
Offset:-2
Orientation:reverse strand
Alignment:--CAGCAGGGGGCGC-----
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A G T C C G T A T A C G A G T C G C T A A C T G A T C G C T A G A T C G T A C G G T A C C T A G A G T C A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.79
Offset:-4
Orientation:forward strand
Alignment:----CAGCAGGGGGCGC--
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A C G T A G T C C G T A T A C G A G T C G C T A A C T G A T C G C T A G A T C G T A C G G T A C C T A G A G T C A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--CAGCAGGGGGCGC
CACAGCAGGGGG---
 A C G T A C G T A G T C C G T A T A C G A G T C G C T A A C T G A T C G C T A G A T C G T A C G G T A C C T A G A G T C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAGGGGGCGC
DCHCAGCAGGRGGCC-
 A C G T A C G T A C G T A G T C C G T A T A C G A G T C G C T A A C T G A T C G C T A G A T C G T A C G G T A C C T A G A G T C
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----CAGCAGGGGGCGC---
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A G T C C G T A T A C G A G T C G C T A A C T G A T C G C T A G A T C G T A C G G T A C C T A G A G T C A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:6
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--CAGCAGGGGGCGC
CACAGCGGGGGGTC-
 A C G T A C G T A G T C C G T A T A C G A G T C G C T A A C T G A T C G C T A G A T C G T A C G G T A C C T A G A G T C
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:7
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAGGGGGCGC
NCNCAGCGGGGGGTC-
 A C G T A C G T A C G T A G T C C G T A T A C G A G T C G C T A A C T G A T C G C T A G A T C G T A C G G T A C C T A G A G T C
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:8
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAGGGGGCGC
NCGCAGCGGGGGGTC-
 A C G T A C G T A C G T A G T C C G T A T A C G A G T C G C T A A C T G A T C G C T A G A T C G T A C G G T A C C T A G A G T C
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CAGCAGGGGGCGC
CCACACAGCAGGAGA---
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A T A C G A G T C G C T A A C T G A T C G C T A G A T C G T A C G G T A C C T A G A G T C
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CAGCAGGGGGCGC
SDGCAGGTGCNS-
 A G T C C G T A T A C G A G T C G C T A A C T G A T C G C T A G A T C G T A C G G T A C C T A G A G T C
A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T