Information for 6-CATCAAGCAGTGG (Motif 13)

A G T C C G T A G A C T A G T C C G T A C G T A A C T G A G T C G T C A A C T G A C G T A C T G C T A G
Reverse Opposite:
A G T C A G T C G T C A A G T C A C G T A C T G A G T C A C G T A C G T A C T G C G T A A C G T A C T G
p-value:1e-10
log p-value:-2.323e+01
Information Content per bp:1.932
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets31.4 +/- 19.1bp
Average Position of motif in Background60.1 +/- 23.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1/MA0070.1/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CATCAAGCAGTGG
CCATCAATCAAA--
 A C G T A G T C C G T A G A C T A G T C C G T A C G T A A C T G A G T C G T C A A C T G A C G T A C T G C T A G
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A A C G T A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CATCAAGCAGTGG
TCATCAATCA----
 A C G T A G T C C G T A G A C T A G T C C G T A C G T A A C T G A G T C G T C A A C T G A C G T A C T G C T A G
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T A C G T A C G T A C G T

PB0144.1_Lef1_2/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CATCAAGCAGTGG
GAAGATCAATCACTTA
 A C G T A C G T A C G T A G T C C G T A G A C T A G T C C G T A C G T A A C T G A G T C G T C A A C T G A C G T A C T G C T A G
T A C G C G T A T C G A T A C G G C T A C G A T A G T C C G T A C T G A C A G T G A T C C T G A G T A C A G C T G C A T C G T A

Hoxa9/MA0594.1/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CATCAAGCAGTGG
GCCATAAATCA----
 A C G T A C G T A G T C C G T A G A C T A G T C C G T A C G T A A C T G A G T C G T C A A C T G A C G T A C T G C T A G
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CATCAAGCAGTGG
GYCATCMATCAT---
 A C G T A C G T A G T C C G T A G A C T A G T C C G T A C G T A A C T G A G T C G T C A A C T G A C G T A C T G C T A G
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T A C G T A C G T

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CATCAAGCAGTGG
GAAGATCAATCACTAA
 A C G T A C G T A C G T A G T C C G T A G A C T A G T C C G T A C G T A A C T G A G T C G T C A A C T G A C G T A C T G C T A G
T A C G C T A G T C G A T A C G G C T A G C A T A G T C C G T A C T G A C A G T G A T C C T G A A T G C A C G T G C T A C G T A

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:7
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CATCAAGCAGTGG
RGCCATYAATCA----
 A C G T A C G T A C G T A G T C C G T A G A C T A G T C C G T A C G T A A C T G A G T C G T C A A C T G A C G T A C T G C T A G
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T A C G T A C G T A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:8
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CATCAAGCAGTGG
TCACCCATCAATAAACA-
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A G A C T A G T C C G T A C G T A A C T G A G T C G T C A A C T G A C G T A C T G C T A G
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CATCAAGCAGTGG----
NNNANTGCAGTGCNNTT
 A G T C C G T A G A C T A G T C C G T A C G T A A C T G A G T C G T C A A C T G A C G T A C T G C T A G A C G T A C G T A C G T A C G T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:10
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CATCAAGCAGTGG
GGCCATAAATCA----
 A C G T A C G T A C G T A G T C C G T A G A C T A G T C C G T A C G T A A C T G A G T C G T C A A C T G A C G T A C T G C T A G
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T A C G T A C G T A C G T