Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 721)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 47079)	% of Background Sequences with Motif
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-107	-2.481e+02	0.0000	220.0	30.51%	2311.6	4.91%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-71	-1.655e+02	0.0000	114.0	15.81%	783.2	1.66%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-60	-1.389e+02	0.0000	125.0	17.34%	1265.0	2.69%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-52	-1.199e+02	0.0000	241.0	33.43%	5530.6	11.75%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-47	-1.087e+02	0.0000	123.0	17.06%	1625.3	3.45%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-40	-9.439e+01	0.0000	48.0	6.66%	187.7	0.40%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-39	-9.107e+01	0.0000	49.0	6.80%	214.3	0.46%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-36	-8.311e+01	0.0000	149.0	20.67%	3012.7	6.40%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-35	-8.078e+01	0.0000	80.0	11.10%	897.1	1.91%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-32	-7.408e+01	0.0000	188.0	26.07%	4866.6	10.34%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-30	-7.044e+01	0.0000	90.0	12.48%	1332.1	2.83%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-23	-5.391e+01	0.0000	94.0	13.04%	1828.6	3.88%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-21	-5.063e+01	0.0000	98.0	13.59%	2063.5	4.38%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-13	-3.053e+01	0.0000	112.0	15.53%	3439.7	7.31%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-12	-2.900e+01	0.0000	51.0	7.07%	1003.2	2.13%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-12	-2.817e+01	0.0000	111.0	15.40%	3522.1	7.48%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-12	-2.791e+01	0.0000	40.0	5.55%	667.5	1.42%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-12	-2.790e+01	0.0000	60.0	8.32%	1362.2	2.89%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-12	-2.774e+01	0.0000	38.0	5.27%	609.5	1.29%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-11	-2.717e+01	0.0000	66.0	9.15%	1620.3	3.44%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-11	-2.588e+01	0.0000	58.0	8.04%	1356.0	2.88%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-11	-2.543e+01	0.0000	52.0	7.21%	1144.6	2.43%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-10	-2.447e+01	0.0000	51.0	7.07%	1138.5	2.42%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-10	-2.326e+01	0.0000	65.0	9.02%	1736.5	3.69%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-9	-2.132e+01	0.0000	29.0	4.02%	469.1	1.00%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-7	-1.824e+01	0.0000	52.0	7.21%	1414.3	3.00%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-6	-1.483e+01	0.0000	22.0	3.05%	394.4	0.84%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-6	-1.450e+01	0.0000	52.0	7.21%	1598.1	3.39%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-5	-1.213e+01	0.0001	57.0	7.91%	1974.1	4.19%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-5	-1.186e+01	0.0001	81.0	11.23%	3187.3	6.77%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-5	-1.163e+01	0.0001	9.0	1.25%	85.0	0.18%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-4	-1.125e+01	0.0001	48.0	6.66%	1607.6	3.41%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-4	-9.865e+00	0.0006	40.0	5.55%	1322.9	2.81%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-4	-9.432e+00	0.0009	8.0	1.11%	88.7	0.19%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-4	-9.311e+00	0.0009	54.0	7.49%	2037.3	4.33%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-3	-8.087e+00	0.0031	48.0	6.66%	1838.7	3.91%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-3	-7.625e+00	0.0048	51.0	7.07%	2031.8	4.32%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-3	-7.554e+00	0.0050	70.0	9.71%	3039.5	6.46%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-3	-7.483e+00	0.0053	42.0	5.83%	1588.3	3.37%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-3	-7.290e+00	0.0062	24.0	3.33%	745.1	1.58%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-3	-7.250e+00	0.0063	82.0	11.37%	3731.9	7.93%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-3	-7.193e+00	0.0065	40.0	5.55%	1512.1	3.21%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-3	-7.131e+00	0.0068	34.0	4.72%	1222.2	2.60%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-3	-7.046e+00	0.0072	91.0	12.62%	4260.4	9.05%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-2	-6.719e+00	0.0098	33.0	4.58%	1205.0	2.56%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-2	-6.643e+00	0.0103	59.0	8.18%	2551.8	5.42%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-2	-6.489e+00	0.0118	54.0	7.49%	2301.6	4.89%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-2	-5.855e+00	0.0217	29.0	4.02%	1074.7	2.28%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-2	-5.769e+00	0.0232	20.0	2.77%	651.9	1.38%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-2	-5.643e+00	0.0258	42.0	5.83%	1756.2	3.73%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-2	-5.638e+00	0.0258	5.0	0.69%	65.0	0.14%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-2	-5.622e+00	0.0258	6.0	0.83%	94.1	0.20%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-2	-5.552e+00	0.0266	31.0	4.30%	1198.3	2.55%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-2	-5.546e+00	0.0266	13.0	1.80%	355.6	0.76%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-2	-5.278e+00	0.0338	36.0	4.99%	1479.3	3.14%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-2	-5.143e+00	0.0380	67.0	9.29%	3184.9	6.77%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-2	-5.071e+00	0.0401	18.0	2.50%	602.0	1.28%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-2	-5.020e+00	0.0415	15.0	2.08%	467.5	0.99%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-2	-4.924e+00	0.0449	31.0	4.30%	1254.3	2.66%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-2	-4.855e+00	0.0472	39.0	5.41%	1681.2	3.57%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-2	-4.816e+00	0.0483	28.0	3.88%	1110.3	2.36%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-2	-4.786e+00	0.0490	53.0	7.35%	2452.2	5.21%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-2	-4.758e+00	0.0496	7.0	0.97%	148.7	0.32%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-2	-4.666e+00	0.0535	29.0	4.02%	1175.3	2.50%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-2	-4.633e+00	0.0545	48.0	6.66%	2196.9	4.67%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-4.584e+00	0.0563	13.0	1.80%	402.0	0.85%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-4.556e+00	0.0571	8.0	1.11%	192.1	0.41%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-1	-4.549e+00	0.0571	48.0	6.66%	2207.5	4.69%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1	-4.521e+00	0.0574	12.0	1.66%	361.0	0.77%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e-1	-4.443e+00	0.0612	8.0	1.11%	196.8	0.42%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-1	-4.332e+00	0.0674	67.0	9.29%	3311.8	7.03%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-4.242e+00	0.0727	24.0	3.33%	957.3	2.03%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-1	-4.233e+00	0.0727	5.0	0.69%	92.7	0.20%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-1	-4.230e+00	0.0727	46.0	6.38%	2139.9	4.55%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-1	-4.090e+00	0.0812	77.0	10.68%	3933.1	8.35%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-1	-4.068e+00	0.0820	15.0	2.08%	524.2	1.11%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-1	-4.000e+00	0.0866	57.0	7.91%	2793.2	5.93%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-3.994e+00	0.0866	70.0	9.71%	3543.4	7.53%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-1	-3.849e+00	0.0981	7.0	0.97%	178.5	0.38%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-3.652e+00	0.1180	13.0	1.80%	456.8	0.97%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-1	-3.578e+00	0.1255	19.0	2.64%	760.0	1.61%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-1	-3.493e+00	0.1350	83.0	11.51%	4408.5	9.36%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-1	-3.480e+00	0.1351	24.0	3.33%	1031.9	2.19%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-3.466e+00	0.1354	15.0	2.08%	567.3	1.21%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-1	-3.465e+00	0.1354	6.0	0.83%	152.6	0.32%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-1	-3.461e+00	0.1354	26.0	3.61%	1140.9	2.42%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-1	-3.414e+00	0.1377	40.0	5.55%	1919.5	4.08%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-1	-3.379e+00	0.1409	17.0	2.36%	675.4	1.43%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-1	-3.343e+00	0.1445	78.0	10.82%	4143.4	8.80%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-3.317e+00	0.1467	10.0	1.39%	335.3	0.71%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-1	-3.288e+00	0.1493	20.0	2.77%	839.4	1.78%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-1	-3.268e+00	0.1506	8.0	1.11%	246.0	0.52%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-1	-3.256e+00	0.1509	21.0	2.91%	895.9	1.90%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-3.169e+00	0.1628	10.0	1.39%	344.6	0.73%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-1	-3.144e+00	0.1651	24.0	3.33%	1068.2	2.27%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-3.014e+00	0.1861	12.0	1.66%	452.4	0.96%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-1	-2.998e+00	0.1872	31.0	4.30%	1473.2	3.13%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-1	-2.988e+00	0.1872	53.0	7.35%	2739.7	5.82%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-1	-2.963e+00	0.1900	17.0	2.36%	713.8	1.52%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-1	-2.882e+00	0.2038	29.0	4.02%	1377.9	2.93%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-1	-2.833e+00	0.2121	33.0	4.58%	1610.7	3.42%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-1	-2.804e+00	0.2160	24.0	3.33%	1109.1	2.36%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-1	-2.798e+00	0.2160	162.0	22.47%	9450.7	20.07%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-1	-2.774e+00	0.2184	26.0	3.61%	1225.0	2.60%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-1	-2.735e+00	0.2251	40.0	5.55%	2028.6	4.31%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-1	-2.674e+00	0.2369	12.0	1.66%	480.0	1.02%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-1	-2.631e+00	0.2450	9.0	1.25%	331.6	0.70%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-1	-2.586e+00	0.2538	30.0	4.16%	1477.6	3.14%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-1	-2.529e+00	0.2663	36.0	4.99%	1832.8	3.89%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-2.483e+00	0.2763	68.0	9.43%	3744.3	7.95%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-1	-2.481e+00	0.2763	6.0	0.83%	196.1	0.42%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-1	-2.467e+00	0.2763	32.0	4.44%	1611.6	3.42%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-1	-2.398e+00	0.2928	35.0	4.85%	1797.3	3.82%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-1	-2.363e+00	0.3005	173.0	23.99%	10305.4	21.89%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-2.348e+00	0.3026	38.0	5.27%	1982.0	4.21%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-1	-2.326e+00	0.3066	30.0	4.16%	1519.1	3.23%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-2.270e+00	0.3214	6.0	0.83%	208.5	0.44%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-2.242e+00	0.3278	8.0	1.11%	309.2	0.66%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-2.182e+00	0.3451	15.0	2.08%	688.5	1.46%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-2.161e+00	0.3494	31.0	4.30%	1606.6	3.41%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-2.138e+00	0.3546	20.0	2.77%	974.6	2.07%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-2.135e+00	0.3546	38.0	5.27%	2024.6	4.30%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-2.058e+00	0.3778	26.0	3.61%	1332.3	2.83%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-2.002e+00	0.3934	8.0	1.11%	328.4	0.70%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-2.002e+00	0.3934	8.0	1.11%	329.0	0.70%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.866e+00	0.4472	81.0	11.23%	4721.1	10.03%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.804e+00	0.4719	11.0	1.53%	510.9	1.09%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-1.791e+00	0.4745	9.0	1.25%	401.2	0.85%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.771e+00	0.4802	9.0	1.25%	403.5	0.86%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.754e+00	0.4847	12.0	1.66%	572.4	1.22%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.745e+00	0.4854	37.0	5.13%	2051.0	4.36%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.719e+00	0.4943	35.0	4.85%	1935.5	4.11%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.689e+00	0.5055	5.0	0.69%	196.3	0.42%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.661e+00	0.5158	30.0	4.16%	1646.7	3.50%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.648e+00	0.5190	5.0	0.69%	199.2	0.42%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-1.631e+00	0.5240	27.0	3.74%	1472.5	3.13%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.624e+00	0.5240	33.0	4.58%	1836.2	3.90%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.608e+00	0.5285	5.0	0.69%	202.0	0.43%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.583e+00	0.5376	15.0	2.08%	768.8	1.63%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-1.578e+00	0.5376	2.0	0.28%	56.0	0.12%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-1.551e+00	0.5472	27.0	3.74%	1489.2	3.16%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.544e+00	0.5472	18.0	2.50%	951.6	2.02%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.526e+00	0.5533	1.0	0.14%	16.1	0.03%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.512e+00	0.5573	13.0	1.80%	662.8	1.41%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.466e+00	0.5792	41.0	5.69%	2367.1	5.03%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.445e+00	0.5875	10.0	1.39%	497.7	1.06%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.415e+00	0.6018	95.0	13.18%	5775.0	12.27%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.402e+00	0.6051	16.0	2.22%	857.3	1.82%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.385e+00	0.6117	55.0	7.63%	3264.2	6.93%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.337e+00	0.6372	2.0	0.28%	65.8	0.14%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-1.313e+00	0.6485	42.0	5.83%	2476.0	5.26%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.292e+00	0.6580	54.0	7.49%	3234.7	6.87%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.290e+00	0.6580	52.0	7.21%	3109.0	6.60%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.286e+00	0.6580	17.0	2.36%	939.3	2.00%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.269e+00	0.6602	35.0	4.85%	2052.3	4.36%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.263e+00	0.6602	24.0	3.33%	1372.3	2.91%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.255e+00	0.6611	2.0	0.28%	69.9	0.15%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.248e+00	0.6613	7.0	0.97%	348.3	0.74%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.246e+00	0.6613	10.0	1.39%	525.7	1.12%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.242e+00	0.6613	64.0	8.88%	3884.7	8.25%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.234e+00	0.6613	81.0	11.23%	4966.6	10.55%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.232e+00	0.6613	15.0	2.08%	828.2	1.76%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.227e+00	0.6613	5.0	0.69%	235.2	0.50%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.216e+00	0.6613	2.0	0.28%	71.2	0.15%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.214e+00	0.6613	1.0	0.14%	23.1	0.05%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.183e+00	0.6719	23.0	3.19%	1330.5	2.83%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.181e+00	0.6719	20.0	2.77%	1145.4	2.43%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-1.179e+00	0.6719	1.0	0.14%	24.2	0.05%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-1.143e+00	0.6871	26.0	3.61%	1528.0	3.25%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.140e+00	0.6871	18.0	2.50%	1031.0	2.19%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.121e+00	0.6940	26.0	3.61%	1533.7	3.26%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-1.119e+00	0.6940	14.0	1.94%	789.2	1.68%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.100e+00	0.7007	53.0	7.35%	3244.1	6.89%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-1.082e+00	0.7087	1.0	0.14%	27.5	0.06%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.057e+00	0.7228	31.0	4.30%	1866.3	3.96%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.051e+00	0.7233	4.0	0.55%	195.0	0.41%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.048e+00	0.7233	12.0	1.66%	680.3	1.45%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.044e+00	0.7233	2.0	0.28%	81.8	0.17%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-9.962e-01	0.7510	29.0	4.02%	1759.5	3.74%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-9.845e-01	0.7556	5.0	0.69%	262.3	0.56%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-9.837e-01	0.7556	2.0	0.28%	85.9	0.18%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-9.837e-01	0.7556	2.0	0.28%	85.1	0.18%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-9.830e-01	0.7556	52.0	7.21%	3229.2	6.86%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-9.564e-01	0.7602	25.0	3.47%	1518.2	3.22%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-9.542e-01	0.7602	8.0	1.11%	450.3	0.96%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-9.529e-01	0.7602	5.0	0.69%	266.5	0.57%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-9.480e-01	0.7602	1.0	0.14%	32.6	0.07%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-9.420e-01	0.7602	18.0	2.50%	1080.0	2.29%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-9.084e-01	0.7765	15.0	2.08%	898.8	1.91%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-9.079e-01	0.7765	3.0	0.42%	150.2	0.32%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-9.048e-01	0.7765	4.0	0.55%	211.7	0.45%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-9.014e-01	0.7765	1.0	0.14%	34.8	0.07%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-9.010e-01	0.7765	18.0	2.50%	1090.4	2.32%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-8.923e-01	0.7765	6.0	0.83%	336.1	0.71%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-8.525e-01	0.7959	80.0	11.10%	5098.2	10.83%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-8.240e-01	0.8146	7.0	0.97%	410.1	0.87%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-8.185e-01	0.8150	7.0	0.97%	411.5	0.87%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-8.179e-01	0.8150	1.0	0.14%	38.7	0.08%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-8.128e-01	0.8150	53.0	7.35%	3373.1	7.16%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-8.106e-01	0.8150	6.0	0.83%	349.9	0.74%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-8.092e-01	0.8150	5.0	0.69%	286.7	0.61%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-8.003e-01	0.8150	8.0	1.11%	478.5	1.02%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-7.871e-01	0.8162	60.0	8.32%	3840.6	8.16%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-7.849e-01	0.8162	23.0	3.19%	1446.4	3.07%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-7.793e-01	0.8162	74.0	10.26%	4753.7	10.10%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-7.736e-01	0.8162	18.0	2.50%	1127.5	2.40%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-7.703e-01	0.8162	5.0	0.69%	292.3	0.62%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-7.475e-01	0.8287	15.0	2.08%	941.1	2.00%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-7.430e-01	0.8287	31.0	4.30%	1980.6	4.21%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-7.368e-01	0.8297	8.0	1.11%	491.6	1.04%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-7.363e-01	0.8297	3.0	0.42%	169.7	0.36%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-7.238e-01	0.8326	4.0	0.55%	235.7	0.50%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-7.220e-01	0.8326	9.0	1.25%	559.9	1.19%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-7.220e-01	0.8326	9.0	1.25%	559.0	1.19%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-7.091e-01	0.8331	9.0	1.25%	562.5	1.19%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-6.932e-01	0.8425	10.0	1.39%	631.8	1.34%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-6.829e-01	0.8474	11.0	1.53%	699.8	1.49%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-6.656e-01	0.8582	50.0	6.93%	3257.8	6.92%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-6.621e-01	0.8582	30.0	4.16%	1950.2	4.14%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-6.474e-01	0.8660	4.0	0.55%	247.7	0.53%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-6.359e-01	0.8721	99.0	13.73%	6484.5	13.77%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-6.340e-01	0.8721	2.0	0.28%	116.5	0.25%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-6.325e-01	0.8721	104.0	14.42%	6814.7	14.48%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-6.304e-01	0.8721	32.0	4.44%	2096.4	4.45%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-6.259e-01	0.8721	13.0	1.80%	847.3	1.80%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-6.224e-01	0.8721	12.0	1.66%	782.6	1.66%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-6.183e-01	0.8721	3.0	0.42%	185.6	0.39%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-6.183e-01	0.8721	3.0	0.42%	185.8	0.39%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-6.173e-01	0.8721	20.0	2.77%	1313.0	2.79%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-6.028e-01	0.8721	59.0	8.18%	3886.5	8.26%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-6.026e-01	0.8721	28.0	3.88%	1846.4	3.92%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-5.953e-01	0.8721	4.0	0.55%	256.5	0.54%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-5.827e-01	0.8723	10.0	1.39%	661.3	1.40%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-5.648e-01	0.8843	37.0	5.13%	2460.9	5.23%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-5.640e-01	0.8843	23.0	3.19%	1533.9	3.26%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-5.636e-01	0.8843	78.0	10.82%	5164.4	10.97%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-5.626e-01	0.8843	11.0	1.53%	734.0	1.56%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-5.531e-01	0.8843	198.0	27.46%	13049.0	27.72%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-5.367e-01	0.8905	7.0	0.97%	472.2	1.00%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-5.360e-01	0.8905	8.0	1.11%	540.4	1.15%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-5.217e-01	0.8964	7.0	0.97%	476.6	1.01%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-5.216e-01	0.8964	22.0	3.05%	1486.2	3.16%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-4.970e-01	0.9113	2.0	0.28%	134.9	0.29%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-4.819e-01	0.9214	3.0	0.42%	208.1	0.44%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-4.712e-01	0.9275	2.0	0.28%	138.7	0.29%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-4.604e-01	0.9337	6.0	0.83%	424.4	0.90%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-4.588e-01	0.9337	2.0	0.28%	140.5	0.30%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-4.480e-01	0.9378	70.0	9.71%	4734.0	10.06%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-4.434e-01	0.9383	1.0	0.14%	67.1	0.14%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-4.361e-01	0.9414	63.0	8.74%	4278.8	9.09%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-4.326e-01	0.9414	68.0	9.43%	4614.8	9.80%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-4.151e-01	0.9538	7.0	0.97%	508.8	1.08%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-4.132e-01	0.9538	141.0	19.56%	9472.1	20.12%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-4.112e-01	0.9538	14.0	1.94%	996.6	2.12%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-4.017e-01	0.9553	4.0	0.55%	298.4	0.63%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-3.966e-01	0.9563	3.0	0.42%	226.9	0.48%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-3.855e-01	0.9633	5.0	0.69%	375.8	0.80%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-3.778e-01	0.9669	8.0	1.11%	592.4	1.26%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-3.775e-01	0.9669	29.0	4.02%	2041.5	4.34%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-3.528e-01	0.9838	128.0	17.75%	8692.2	18.46%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-3.363e-01	0.9964	35.0	4.85%	2482.0	5.27%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-3.138e-01	1.0000	19.0	2.64%	1397.9	2.97%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-3.128e-01	1.0000	25.0	3.47%	1814.1	3.85%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-2.993e-01	1.0000	15.0	2.08%	1126.6	2.39%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-2.983e-01	1.0000	7.0	0.97%	553.9	1.18%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-2.961e-01	1.0000	15.0	2.08%	1128.7	2.40%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-2.902e-01	1.0000	39.0	5.41%	2796.6	5.94%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-2.876e-01	1.0000	9.0	1.25%	704.7	1.50%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-2.831e-01	1.0000	30.0	4.16%	2184.2	4.64%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-2.759e-01	1.0000	40.0	5.55%	2879.7	6.12%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-2.665e-01	1.0000	19.0	2.64%	1431.1	3.04%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-2.661e-01	1.0000	156.0	21.64%	10690.3	22.71%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-2.656e-01	1.0000	3.0	0.42%	263.8	0.56%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-2.544e-01	1.0000	77.0	10.68%	5422.1	11.52%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-2.542e-01	1.0000	3.0	0.42%	267.6	0.57%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-2.514e-01	1.0000	2.0	0.28%	187.0	0.40%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-2.508e-01	1.0000	7.0	0.97%	576.5	1.22%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-2.497e-01	1.0000	13.0	1.80%	1016.2	2.16%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-2.478e-01	1.0000	9.0	1.25%	726.2	1.54%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-2.465e-01	1.0000	38.0	5.27%	2773.1	5.89%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-2.435e-01	1.0000	43.0	5.96%	3121.4	6.63%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-2.378e-01	1.0000	11.0	1.53%	879.7	1.87%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-2.311e-01	1.0000	62.0	8.60%	4438.3	9.43%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-2.308e-01	1.0000	4.0	0.55%	356.4	0.76%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-2.230e-01	1.0000	1.0	0.14%	105.5	0.22%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-2.210e-01	1.0000	39.0	5.41%	2872.4	6.10%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-2.198e-01	1.0000	6.0	0.83%	517.7	1.10%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-2.162e-01	1.0000	8.0	1.11%	671.4	1.43%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-2.153e-01	1.0000	2.0	0.28%	198.3	0.42%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-2.118e-01	1.0000	1.0	0.14%	108.4	0.23%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-2.068e-01	1.0000	14.0	1.94%	1121.2	2.38%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-2.057e-01	1.0000	26.0	3.61%	1981.0	4.21%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.942e-01	1.0000	2.0	0.28%	206.1	0.44%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.877e-01	1.0000	70.0	9.71%	5055.0	10.74%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.831e-01	1.0000	10.0	1.39%	845.7	1.80%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.821e-01	1.0000	109.0	15.12%	7713.8	16.39%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.811e-01	1.0000	3.0	0.42%	298.4	0.63%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.807e-01	1.0000	23.0	3.19%	1796.3	3.82%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.752e-01	1.0000	2.0	0.28%	214.8	0.46%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.738e-01	1.0000	34.0	4.72%	2585.4	5.49%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.708e-01	1.0000	2.0	0.28%	216.5	0.46%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.699e-01	1.0000	6.0	0.83%	548.2	1.16%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.595e-01	1.0000	9.0	1.25%	789.1	1.68%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.536e-01	1.0000	6.0	0.83%	560.1	1.19%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.482e-01	1.0000	2.0	0.28%	227.2	0.48%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-1.474e-01	1.0000	50.0	6.93%	3749.7	7.96%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.463e-01	1.0000	2.0	0.28%	228.0	0.48%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.435e-01	1.0000	26.0	3.61%	2060.8	4.38%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.435e-01	1.0000	6.0	0.83%	568.3	1.21%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.426e-01	1.0000	4.0	0.55%	405.8	0.86%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.416e-01	1.0000	1.0	0.14%	132.7	0.28%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.414e-01	1.0000	11.0	1.53%	959.8	2.04%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-1.386e-01	1.0000	20.0	2.77%	1632.1	3.47%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.355e-01	1.0000	15.0	2.08%	1267.0	2.69%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.331e-01	1.0000	33.0	4.58%	2578.1	5.48%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.297e-01	1.0000	10.0	1.39%	896.0	1.90%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.237e-01	1.0000	9.0	1.25%	824.6	1.75%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.164e-01	1.0000	35.0	4.85%	2752.5	5.85%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.134e-01	1.0000	122.0	16.92%	8777.8	18.65%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-9.578e-02	1.0000	1.0	0.14%	156.8	0.33%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-9.569e-02	1.0000	11.0	1.53%	1016.8	2.16%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-9.215e-02	1.0000	8.0	1.11%	783.9	1.67%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-8.823e-02	1.0000	9.0	1.25%	869.8	1.85%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-8.732e-02	1.0000	2.0	0.28%	268.0	0.57%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-8.708e-02	1.0000	34.0	4.72%	2746.4	5.83%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-7.973e-02	1.0000	5.0	0.69%	550.4	1.17%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-7.543e-02	1.0000	16.0	2.22%	1439.3	3.06%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-6.447e-02	1.0000	3.0	0.42%	390.5	0.83%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-6.088e-02	1.0000	5.0	0.69%	578.8	1.23%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-6.027e-02	1.0000	1.0	0.14%	185.8	0.39%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-5.578e-02	1.0000	49.0	6.80%	3930.2	8.35%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-5.310e-02	1.0000	13.0	1.80%	1258.6	2.67%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-4.081e-02	1.0000	56.0	7.77%	4508.6	9.58%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-3.107e-02	1.0000	57.0	7.91%	4645.2	9.87%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-2.921e-02	1.0000	19.0	2.64%	1822.9	3.87%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-2.279e-02	1.0000	1.0	0.14%	247.4	0.53%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.596e-02	1.0000	21.0	2.91%	2074.0	4.41%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.272e-02	1.0000	10.0	1.39%	1191.7	2.53%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.105e-02	1.0000	132.0	18.31%	10214.4	21.70%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-7.702e-03	1.0000	3.0	0.42%	568.4	1.21%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-5.345e-03	1.0000	44.0	6.10%	4042.0	8.59%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-4.762e-03	1.0000	1.0	0.14%	348.3	0.74%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-2.688e-03	1.0000	45.0	6.24%	4239.4	9.01%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-1.289e-03	1.0000	3.0	0.42%	709.8	1.51%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-6.380e-04	1.0000	1.0	0.14%	478.5	1.02%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-4.440e-04	1.0000	8.0	1.11%	1347.1	2.86%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-7.700e-05	1.0000	3.0	0.42%	921.5	1.96%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-0.000e+00	1.0000	25.0	3.47%	3830.0	8.14%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-0.000e+00	1.0000	26.0	3.61%	4396.3	9.34%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	0.000e+00	1.0000	0.0	0.00%	94.8	0.20%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	29.2	0.06%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	0.000e+00	1.0000	0.0	0.00%	19.2	0.04%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	0.000e+00	1.0000	0.0	0.00%	106.1	0.23%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	0.000e+00	1.0000	0.0	0.00%	174.6	0.37%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	46.1	0.10%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	0.000e+00	1.0000	0.0	0.00%	174.6	0.37%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	53.2	0.11%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	17.1	0.04%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	21.7	0.05%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	0.000e+00	1.0000	0.0	0.00%	151.4	0.32%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	0.000e+00	1.0000	0.0	0.00%	56.6	0.12%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	1.5	0.00%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	22.0	0.05%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	13.3	0.03%