Information for 20-CACAAACCCGTGT (Motif 40)

A G T C C G T A A G T C C G T A C G T A C G T A A G T C A G T C A G T C A C T G A C G T A C T G A C G T
Reverse Opposite:
C G T A A G T C C G T A A G T C A C T G A C T G A C T G A C G T A C G T A C G T A C T G A C G T A C T G
p-value:1e-5
log p-value:-1.228e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.42%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets39.3 +/- 31.7bp
Average Position of motif in Background63.2 +/- 16.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CLOCK/MA0819.1/Jaspar

Match Rank:1
Score:0.65
Offset:4
Orientation:forward strand
Alignment:CACAAACCCGTGT-
----AACACGTGTT
 A G T C C G T A A G T C C G T A C G T A C G T A A G T C A G T C A G T C A C T G A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T C T G A T C G A G T A C T C G A G A T C C T A G A C G T A C T G A G C T G A C T

GRHL1/MA0647.1/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CACAAACCCGTGT-
--NAAACCGGTTTT
 A G T C C G T A A G T C C G T A C G T A C G T A A G T C A G T C A G T C A C T G A C G T A C T G A C G T A C G T
A C G T A C G T G C T A C G T A C T G A C G T A A T G C G A T C C A T G A C T G G C A T G A C T G C A T C A G T

TFCP2/MA0145.3/Jaspar

Match Rank:3
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CACAAACCCGTGT
---AAACCGGTTT
 A G T C C G T A A G T C C G T A C G T A C G T A A G T C A G T C A G T C A C T G A C G T A C T G A C G T
A C G T A C G T A C G T T C G A C G T A C G T A T A G C G A T C C T A G A T C G G C A T G A C T G A C T

PB0024.1_Gcm1_1/Jaspar

Match Rank:4
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CACAAACCCGTGT----
-TCGTACCCGCATCATT
 A G T C C G T A A G T C C G T A C G T A C G T A A G T C A G T C A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T G C A T T G A C T C A G C G A T T C G A G T A C G T A C G T A C A T C G A G T C C G T A A G C T T A G C C G T A G A C T C A G T

MAX/MA0058.3/Jaspar

Match Rank:5
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CACAAACCCGTGT-
----ACCACGTGCT
 A G T C C G T A A G T C C G T A C G T A C G T A A G T C A G T C A G T C A C T G A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T T G C A T G A C G T A C C T G A A G T C T C A G G A C T A C T G A T G C G A C T

MF0007.1_bHLH(zip)_class/Jaspar

Match Rank:6
Score:0.54
Offset:4
Orientation:forward strand
Alignment:CACAAACCCGTGT
----ACCACGTG-
 A G T C C G T A A G T C C G T A C G T A C G T A A G T C A G T C A G T C A C T G A C G T A C T G A C G T
A C G T A C G T A C G T A C G T T C G A T A G C G A T C C T G A A T G C T A C G G C A T C T A G A C G T

Npas2/MA0626.1/Jaspar

Match Rank:7
Score:0.54
Offset:4
Orientation:forward strand
Alignment:CACAAACCCGTGT-
----GGCACGTGTC
 A G T C C G T A A G T C C G T A C G T A C G T A A G T C A G T C A G T C A C T G A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T C T A G T A C G A G T C C G T A G T A C C T A G A C G T C T A G A C G T G T A C

PB0043.1_Max_1/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CACAAACCCGTGT---
CCNNANCACGTGGTCN
 A G T C C G T A A G T C C G T A C G T A C G T A A G T C A G T C A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T
G T A C G T A C A G T C T A C G T G C A T A G C G T A C C T G A A G T C T C A G G A C T A C T G A T C G A C G T G T A C G T C A

NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer

Match Rank:9
Score:0.54
Offset:4
Orientation:forward strand
Alignment:CACAAACCCGTGT
----NVCACGTG-
 A G T C C G T A A G T C C G T A C G T A C G T A A G T C A G T C A G T C A C T G A C G T A C T G A C G T
A C G T A C G T A C G T A C G T C G A T T G C A G T A C C G T A A G T C C T A G G A C T C A T G A C G T

MNT/MA0825.1/Jaspar

Match Rank:10
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CACAAACCCGTGT-
----ACCACGTGCC
 A G T C C G T A A G T C C G T A C G T A C G T A A G T C A G T C A G T C A C T G A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T C T G A T A G C G T A C C G T A A G T C C T A G A C G T A C T G T G A C G A T C