Information for 10-GGAACTAATT (Motif 22)

C A T G A T C G G C T A T G C A A T G C G A C T G C T A C G T A A G C T G C A T
Reverse Opposite:
C G T A C T G A G C A T C G A T C T G A T A C G A C G T C A G T T A G C G A T C
p-value:1e-9
log p-value:-2.087e+01
Information Content per bp:1.696
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif6.24%
Number of Background Sequences with motif1033.1
Percentage of Background Sequences with motif2.19%
Average Position of motif in Targets42.3 +/- 24.7bp
Average Position of motif in Background49.4 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0028.1_En1/Jaspar

Match Rank:1
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-GGAACTAATT-----
GCGAACTAATTAATGC
 A C G T C A T G A T C G G C T A T G C A A T G C G A C T G C T A C G T A A G C T G C A T A C G T A C G T A C G T A C G T A C G T
T C A G T A G C T A C G T G C A T G C A A G T C A G C T C T G A C T G A C G A T A C G T C T G A C T G A A C G T C T A G T A G C

PH0106.1_Msx1/Jaspar

Match Rank:2
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GGAACTAATT-----
TGCAACTAATTAATTC
 A C G T C A T G A T C G G C T A T G C A A T G C G A C T G C T A C G T A A G C T G C A T A C G T A C G T A C G T A C G T A C G T
A C G T T C A G G T A C G C T A C T G A G A T C G A C T G T C A C G T A C G A T C G A T C T G A C T G A A C G T G C A T G T A C

PH0033.1_Gbx1/Jaspar

Match Rank:3
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GGAACTAATT------
TGCCACTAATTAGTGTA
 A C G T C A T G A T C G G C T A T G C A A T G C G A C T G C T A C G T A A G C T G C A T A C G T A C G T A C G T A C G T A C G T A C G T
G C A T C T A G A T G C T G A C T C G A G T A C G A C T G T C A C T G A A G C T A C G T C T G A A C T G A C G T A C T G A C G T G C T A

PH0154.1_Prrx1/Jaspar

Match Rank:4
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GGAACTAATT-------
GTAACTAATTAACTACT
 C A T G A T C G G C T A T G C A A T G C G A C T G C T A C G T A A G C T G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T A C G A C G T G T C A T C G A A G T C G A C T T C G A C T G A A G C T A G C T C T G A T C G A A G T C C A G T C T G A T A G C A G C T

PH0039.1_Mnx1/Jaspar

Match Rank:5
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GGAACTAATT-----
NNNCACTAATTANTNN
 A C G T C A T G A T C G G C T A T G C A A T G C G A C T G C T A C G T A A G C T G C A T A C G T A C G T A C G T A C G T A C G T
A T G C C T A G A T G C G A T C T G C A A T G C G A C T G T C A C G T A G A C T A C G T C T G A T A C G A C G T T G C A T G A C

PH0092.1_Lhx2/Jaspar

Match Rank:6
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GGAACTAATT-------
TAAACTAATTAGTGAAC
 C A T G A T C G G C T A T G C A A T G C G A C T G C T A C G T A A G C T G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T T G C A G T C A T C G A G A T C G A C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C A T G G T C A G T C A A T G C

LHX2/MA0700.1/Jaspar

Match Rank:7
Score:0.70
Offset:3
Orientation:forward strand
Alignment:GGAACTAATT---
---ACTAATTAAC
 C A T G A T C G G C T A T G C A A T G C G A C T G C T A C G T A A G C T G C A T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A A G T C G A C T G T C A C T G A A C G T A C G T C T G A C T G A A T G C

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:8
Score:0.70
Offset:2
Orientation:forward strand
Alignment:GGAACTAATT--
--ADBTAATTAR
 C A T G A T C G G C T A T G C A A T G C G A C T G C T A C G T A A G C T G C A T A C G T A C G T
A C G T A C G T C G T A C G T A A G C T G A C T T G C A G T C A A C G T A G C T C T G A T C A G

PH0108.1_Msx3/Jaspar

Match Rank:9
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GGAACTAATT-----
CAAAACCAATTAATTT
 A C G T C A T G A T C G G C T A T G C A A T G C G A C T G C T A C G T A A G C T G C A T A C G T A C G T A C G T A C G T A C G T
T G A C T C G A G T C A C T G A T C G A A T G C A G T C C T G A G T C A C G A T G A C T C G T A C T G A A C G T G A C T G C A T

PH0001.1_Alx3/Jaspar

Match Rank:10
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GGAACTAATT------
NTNAGCTAATTAGTTNA
 A C G T C A T G A T C G G C T A T G C A A T G C G A C T G C T A C G T A A G C T G C A T A C G T A C G T A C G T A C G T A C G T A C G T
A G T C C G A T A T G C T C G A C T A G G A T C A G C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C G A T A G C T G C T A